PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49942.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 684aa MW: 77770.1 Da PI: 10.1754

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.8e-11	14	64	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 + W t E++ll++av+++G+++W++Ia +++ +t+ +c+++++ GAY49942.1 14 QQWGTLEELLLACAVNRHGTRSWDSIAMEVQnrssalSSLTPQSCRDKFNE 64 67*******************************99999*****9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MARERHGTTS QQQQQWGTLE ELLLACAVNR HGTRSWDSIA MEVQNRSSAL SSLTPQSCRD 60 KFNEIRRRFT VKNGAESTSL VPLVDQLRQI RVQELRAEVQ RRDVSIVSLE LKVKRLEEER 120 EKSMKPEADL ESDRKAMPEI EAAVDGDGDS NRSFNESNST TQKAETTNKK QNDDAEGEEE 180 KEQKMKPEPD VENDPVQNRT ESGPDREDRD WSSNGKLNEN GNGTGNVKEE TDEDNDKTAS 240 EGKVESVKNK TSAVGGLSES NELWDESKRE GKQSSDVQSS ASLSRNKRRR SGEEPYDEEV 300 SPATKKVLAV KSEPLVRFLG MIRSHRLSSH FERRLRSQES ERYKKLVRQH IDLRTIQSRL 360 DRGLYSNCFQ KFFRDLLLLF NNFVIFFRKS SQEYAAAQEL RTLVIKEMTD MLRKQQPIAV 420 TKPKPKPKPE HHRQQPQPPP ASLSKPNRGS TMVVCGKRSS IKAISKNAYG KKGDRKDREV 480 EEKPKVNEKK VDSSFVGIED KGIKKKRSQE RSVSLRRNSR SSSRSGDVKH QFGGNELSSH 540 DTLEAKTENK KENAVKKKKL GAASFLKRMK QNSPSEVMED DDEEEDENDN DNDDDDSGDD 600 SKDSKVEEEK KRRSVTRRDV NRVTRSSRGR GVREENRRRG VGRPPKRSAS GAMSPPEKTS 660 GKRGRDNGES EVGGGGRSRK RTRR

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MARERHGTTS QQQQQWGTLE ELLLACAVNR HGTRSWDSIA MEVQNRSSAL SSLTPQSCRD  60
KFNEIRRRFT VKNGAESTSL VPLVDQLRQI RVQELRAEVQ RRDVSIVSLE LKVKRLEEER  120
EKSMKPEADL ESDRKAMPEI EAAVDGDGDS NRSFNESNST TQKAETTNKK QNDDAEGEEE  180
KEQKMKPEPD VENDPVQNRT ESGPDREDRD WSSNGKLNEN GNGTGNVKEE TDEDNDKTAS  240
EGKVESVKNK TSAVGGLSES NELWDESKRE GKQSSDVQSS ASLSRNKRRR SGEEPYDEEV  300
SPATKKVLAV KSEPLVRFLG MIRSHRLSSH FERRLRSQES ERYKKLVRQH IDLRTIQSRL  360
DRGLYSNCFQ KFFRDLLLLF NNFVIFFRKS SQEYAAAQEL RTLVIKEMTD MLRKQQPIAV  420
TKPKPKPKPE HHRQQPQPPP ASLSKPNRGS TMVVCGKRSS IKAISKNAYG KKGDRKDREV  480
EEKPKVNEKK VDSSFVGIED KGIKKKRSQE RSVSLRRNSR SSSRSGDVKH QFGGNELSSH  540
DTLEAKTENK KENAVKKKKL GAASFLKRMK QNSPSEVMED DDEEEDENDN DNDDDDSGDD  600
SKDSKVEEEK KRRSVTRRDV NRVTRSSRGR GVREENRRRG VGRPPKRSAS GAMSPPEKTS  660
GKRGRDNGES EVGGGGRSRK RTRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	3e-38	MYB_related family protein