PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49474.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 334aa MW: 37484 Da PI: 8.6614

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.3	7.6e-13	43	100	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g+ GAY49474.1 43 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDNEEAAARAYDLAALKYWGH 100 57*****************99998898888888******************997 PP
2	AP2	53.2	7.3e-17	131	182	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a+++a+ +++g GAY49474.1 131 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAQAYDRAAIEYRG 182 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MAKTSRQSQK NTTTNPNNNN TVTTKTKRTR KSVPRDSPPQ RSSIYRGVTR HRWTGRYEAH 60 LWDKNCWNES QNKKGRQGAY DNEEAAARAY DLAALKYWGH DTILNFPLSN YEEELVEMEG 120 QKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL GTYATQEEAA QAYDRAAIEY 180 RGLNAVTNFD LSKYIKWLRP NNNQNNPKPS NPQQNPNSDD TSPIPKLNQE TSSGSETSAP 240 PPRSGATAGG SGSASSALGL LLQSSKYKEM VEKTSTDCLS TSSEPGSSHR IFPDDIQTMF 300 FDCQDSSSYT EGDDVLLGDL NPYIFPTFYS ELDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	7e-93	AP2 family protein