PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49360.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 1102aa MW: 121706 Da PI: 8.0787

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.1e-41	172	249	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ GAY49360.1 172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 249 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1102 aa Download sequence
MEEVGAQVAP SILMHQRLSS RLCEAPTMTM TMTMAKKRHL SYQAQSQNHY GGEQQNWNPK 60 LWEWDSVGFV GKPVLDSDSE VLRLGGATAS ESPNKTTDNI NYNYNYNNQK KGNTTTASAV 120 TVGNVEEDGR LDLNLGGGLT AVDVEQPEPP VVTSKPNKRV RSGSPGTAPY PMCQVDNCKE 180 DLSNAKDYHR RHKVCELHSK STKALVGKQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH 240 NRRRRKTQPE DITSRMLIHG HGNQSNNPTA NVDIVNLLTA LARTQGKTED RSISCSSVPD 300 REQLLMILSK INSLPLPADL AAKLHNFGSL NRKTPVHTST DVQNRLNENT SSPSTMDLLA 360 VLSSTLTASS PDTLVAHSQR SSHSSDSEKT KSTCPEQATP NFLKRTTMDF PSVGGERSST 420 SYQSPVEDSD GQNQETRVNL PLQLFSSSPE DDSPPKLSSS RKYFSSDSSN PIEERSPSSS 480 PVVQTFFPMQ STSETVKSEK LSIGREVNAN VEGSQSHGSI MPLELFRGTN KAADNCSFQS 540 FPYQAGYTSS SGSDHSPSSL NSDAQDCTGR IIFKLFDKDP SQFPGTLRKQ IYNWLSNSPS 600 EMESYIRPGC VILSLYVSMP YATWEQLEGN LLQRVNSLVQ DSDSDFWRNA RFLVHTGKQL 660 ASHKDGNIRV CKSWRTWSSP ELISVSPLAV VGGQELSFKL RGRNLTNLGT KIHCTFMGGY 720 ASQEVTSSTC QGSIYDEIIL AGLKIQDTSP SVMGRFFIEV ENGFKGNSFP VIIADATICK 780 ELSLLESEFG AEAKVCDVIS EHQAHEYGRP RSREEVLHFL NELGWLFQRK RASSIVKGSD 840 YSLSRFKFLL VFSVDRGCCA LVKAILDILV EGNLSMDGLS RESLEMLWEI QLLNRAVKMK 900 CRRMVDLLIH YSLTSSNDTP QKYIFPPNLA GPGGITPLHL AACTSDSDDI IDALTNDPQE 960 IGPSSWNSIL DASGHSPYSY ALMKNNHAYN KLVARKLADR RNGQVTIPVG VEIEQSGLAK 1020 EQVHGLSSQF KQRGKSCTKC AVAAAKLNKR VRGSQGLLNR PYIHSMLAIA AVCVCVCLFL 1080 RGSPDIGLVA PFKWENLDFG PK

Sequence ? help Back to Top

Protein Sequence Length: 1102 aa Download sequence

MEEVGAQVAP SILMHQRLSS RLCEAPTMTM TMTMAKKRHL SYQAQSQNHY GGEQQNWNPK  60
LWEWDSVGFV GKPVLDSDSE VLRLGGATAS ESPNKTTDNI NYNYNYNNQK KGNTTTASAV  120
TVGNVEEDGR LDLNLGGGLT AVDVEQPEPP VVTSKPNKRV RSGSPGTAPY PMCQVDNCKE  180
DLSNAKDYHR RHKVCELHSK STKALVGKQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH  240
NRRRRKTQPE DITSRMLIHG HGNQSNNPTA NVDIVNLLTA LARTQGKTED RSISCSSVPD  300
REQLLMILSK INSLPLPADL AAKLHNFGSL NRKTPVHTST DVQNRLNENT SSPSTMDLLA  360
VLSSTLTASS PDTLVAHSQR SSHSSDSEKT KSTCPEQATP NFLKRTTMDF PSVGGERSST  420
SYQSPVEDSD GQNQETRVNL PLQLFSSSPE DDSPPKLSSS RKYFSSDSSN PIEERSPSSS  480
PVVQTFFPMQ STSETVKSEK LSIGREVNAN VEGSQSHGSI MPLELFRGTN KAADNCSFQS  540
FPYQAGYTSS SGSDHSPSSL NSDAQDCTGR IIFKLFDKDP SQFPGTLRKQ IYNWLSNSPS  600
EMESYIRPGC VILSLYVSMP YATWEQLEGN LLQRVNSLVQ DSDSDFWRNA RFLVHTGKQL  660
ASHKDGNIRV CKSWRTWSSP ELISVSPLAV VGGQELSFKL RGRNLTNLGT KIHCTFMGGY  720
ASQEVTSSTC QGSIYDEIIL AGLKIQDTSP SVMGRFFIEV ENGFKGNSFP VIIADATICK  780
ELSLLESEFG AEAKVCDVIS EHQAHEYGRP RSREEVLHFL NELGWLFQRK RASSIVKGSD  840
YSLSRFKFLL VFSVDRGCCA LVKAILDILV EGNLSMDGLS RESLEMLWEI QLLNRAVKMK  900
CRRMVDLLIH YSLTSSNDTP QKYIFPPNLA GPGGITPLHL AACTSDSDDI IDALTNDPQE  960
IGPSSWNSIL DASGHSPYSY ALMKNNHAYN KLVARKLADR RNGQVTIPVG VEIEQSGLAK  1020
EQVHGLSSQF KQRGKSCTKC AVAAAKLNKR VRGSQGLLNR PYIHSMLAIA AVCVCVCLFL  1080
RGSPDIGLVA PFKWENLDFG PK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein