PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49153.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 279aa MW: 31561.6 Da PI: 9.9873

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	137.5	3.6e-43	106	182	25	101
NF-YC 25 rikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 ikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivpr++l GAY49153.1 106 LIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDL 182 49************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MVIKLKGKTV KYRTEEHPPT ATIKGEQQRQ NSKKTHSAFV VSCPKFRGFN LGEGGKSKRI 60 RKVWIGKDTV DNPHLWGWLV VELKCHTAQT RISRIKWLAV PTLAQLIKKI MKADEDVRMI 120 SAEAPVIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE 180 DLKDEVLASI PRGTLPVGGP PDMPPYCYMP TQHASQVGSA GLIMGKPVMD PAIYAQQPHP 240 YMGQQMWPQG ADQQQEGVGR PLETKSPQLS FRQREADLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	158	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	3e-67	NF-YC family protein