PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY49090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 29429.6 Da PI: 7.1167 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.6 | 6e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ +nrqvtfskRr g+lKKA ELSvLCdae+ +iifs tgkl e++s GAY49090.1 10 RIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCS 59 9***********************************************96 PP | |||||||
2 | K-box | 61.8 | 2.8e-21 | 83 | 169 | 9 | 94 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 ++++++e ++el +++ke++nL+ ++R++ G+ dL+s +l+eL qLe+qLe s+kk+R +K+e+l++q+++l +kek+l+een+++ GAY49090.1 83 VNNHDSEAIYNELGRMRKETHNLELSLRRYTGDiDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQI 169 66778899************************989*************************************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence |
MGRGKIEIAR IESRTNRQVT FSKRRGGLLK KARELSVLCD AEIGLIIFSC TGKLTEFCSE 60 STSIEEIIRR YQAAKGVRIP AGVNNHDSEA IYNELGRMRK ETHNLELSLR RYTGDIDLNS 120 VKLEELTQLE HQLECSVKKV RVRKMEILRQ QTDNLLRKEK MLEEENEQIF SLFKDNNNQM 180 AWEQQQQQQA AMVSKFEEHG QVLDQFPFSG EAQPSSVLEL AIPHYQPFRL QPTQPNLQDF 240 GLHFPTFGIL YILF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23260.2 | 8e-56 | MIKC_MADS family protein |