PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY48797.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 27061.6 Da PI: 5.7311 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.6 | 4.4e-20 | 35 | 79 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + e+k qvtfskRr g++ KA EL+vLC+aev +i+fs++gk+ GAY48797.1 35 KLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKI 79 56899999***********************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence |
MNNNINISNN NNGNNIDPSS KKKITRGRQK IQIKKLEDKN SLQVTFSKRR SGLFSKAMEL 60 CVLCGAEVGI IVFSPNGKIF LAGHPDFDKI LNRYLDQNHS SLDEVNTIPC VQQHNKEYED 120 AMQELEKEKK RGKMIEEEKK KNKSNGRFWW QEDNIIDDMG IEELEEYLKA MKKLKGKVEM 180 RVNEIMMNGY LAPNMNLGND HPDAFGNINV NVNEDISVSG GIDGGVDFDF GFDEHFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-35 | M-type_MADS family protein |