PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48795.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 413aa MW: 46705 Da PI: 9.9506

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.8	1.1e-21	22	66	5	49
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+sn qvtfskRr+g++KKA+EL++LC+a++a+i+fs+ k++ + GAY48795.1 22 NESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66 89************************************9999887 PP
2	SRF-TF	63.1	3e-20	219	265	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i k qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k + + GAY48795.1 219 IPKKNHLQVTFSKRRTGVFKKASELSTLCGVDIAIIVFSPANKAFSF 265 55667789********************************9997766 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MSDMSSKKSK GRQKVEMVKM PNESNLQVTF SKRRTGLFKK ASELCTLCGA DIAIIVFSPG 60 KKVFSFGHPC VETIVDRYLT RNPPQISGTM QLIEAHRNAG VRELNMQLTQ VLNQLEIEKK 120 RGEELNQMRK ASQAQCWWEA PIEELNLPQL EQLKMSLEEL KKNVGKQAEK MLIQCSNPPQ 180 FFAGSSSNAG GMNLPFDPNN NAAMKKPCAG RQKIAISKIP KKNHLQVTFS KRRTGVFKKA 240 SELSTLCGVD IAIIVFSPAN KAFSFGHPNV DSIIDRYLAR NSNPPSESGT NRLIEAHRNA 300 NIRELNMQLT QVLHQLEVEK KHGEVMSEIR KASRSQCWWE TPINELGLHE LEQLKTAMEE 360 LKKNVEQQAN KILIDSENNP SPSFARALDI IMIISRSFFE FCLISIKWRQ LQG

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MSDMSSKKSK GRQKVEMVKM PNESNLQVTF SKRRTGLFKK ASELCTLCGA DIAIIVFSPG  60
KKVFSFGHPC VETIVDRYLT RNPPQISGTM QLIEAHRNAG VRELNMQLTQ VLNQLEIEKK  120
RGEELNQMRK ASQAQCWWEA PIEELNLPQL EQLKMSLEEL KKNVGKQAEK MLIQCSNPPQ  180
FFAGSSSNAG GMNLPFDPNN NAAMKKPCAG RQKIAISKIP KKNHLQVTFS KRRTGVFKKA  240
SELSTLCGVD IAIIVFSPAN KAFSFGHPNV DSIIDRYLAR NSNPPSESGT NRLIEAHRNA  300
NIRELNMQLT QVLHQLEVEK KHGEVMSEIR KASRSQCWWE TPINELGLHE LEQLKTAMEE  360
LKKNVEQQAN KILIDSENNP SPSFARALDI IMIISRSFFE FCLISIKWRQ LQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	8e-72	M-type_MADS family protein