PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY48734.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 25361.4 Da PI: 10.7076 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5.2e-12 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ GAY48734.1 5 KQKWTQEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55 79***********************************88***********9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence |
MGAPKQKWTQ EEEAALKAGV IKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMS 60 NGWGSRDKSR LAVKRIPHIA KSEENSLALS STVVQSDEEE IVDAKPLAVS GATPQIAAAP 120 KRSIVRLDNL IMEAITTLKE PGGSNKTTIA AYIEEKYWAP PDFKRLLSAK LKYLAGTGKL 180 VKIKRKYRIA PTLPFQDRRR NSMLLLEGRQ RISHKVNNDD INMIRA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49950.1 | 1e-104 | MYB_related family protein |