PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48382.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 344aa MW: 40402.6 Da PI: 9.3695

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	178	201	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k F +L +H + H GAY48382.1 178 WRCGYCKKKFYEEKYLDKHFENrH 201 58*****************87766 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGVVEQLVRR HCVLSTRNFG ADAVRFFFSN YFKHGTDVDF ETTSLRCRLE VADCFCQNFK 60 DSEDTFRRYP KMKKRSGSKR TVVFLFLCLP FSSTALQLTQ DFKESAPGRN LKQVEEDVHE 120 VHCSRERSRA AWNIIDEYLM PFVEKEQYLI SPKCRLHPDN DLYRDQEQHK FHVDVDEWRC 180 GYCKKKFYEE KYLDKHFENR HYNLLNVSTG RCMADICGAL HCDLMLEPMI RKTKCNPAAA 240 ARNRHLCESL ANSCFPVNEG PSASRLHEFF LRQFCDAHTC TGKRKPLSKG RRKRTSMTYV 300 TISILILMLL PLFYGFVYLY QRGIKRGAQE LKRISQGGRK KKPY

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGVVEQLVRR HCVLSTRNFG ADAVRFFFSN YFKHGTDVDF ETTSLRCRLE VADCFCQNFK  60
DSEDTFRRYP KMKKRSGSKR TVVFLFLCLP FSSTALQLTQ DFKESAPGRN LKQVEEDVHE  120
VHCSRERSRA AWNIIDEYLM PFVEKEQYLI SPKCRLHPDN DLYRDQEQHK FHVDVDEWRC  180
GYCKKKFYEE KYLDKHFENR HYNLLNVSTG RCMADICGAL HCDLMLEPMI RKTKCNPAAA  240
ARNRHLCESL ANSCFPVNEG PSASRLHEFF LRQFCDAHTC TGKRKPLSKG RRKRTSMTYV  300
TISILILMLL PLFYGFVYLY QRGIKRGAQE LKRISQGGRK KKPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-110	C2H2 family protein