PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY48345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 843aa MW: 92877.2 Da PI: 6.5901 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 26 | 84 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ GAY48345.1 26 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 84 5679*****************************************************97 PP | |||||||
2 | START | 178.7 | 3.3e-56 | 175 | 389 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHH.....HHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlal.....lveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v ++++ +v+e+l+d++ W ++++++e+++v+ +g g+++l GAY48345.1 175 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRvsrpaVVAEILKDRPSWYRDCRSVEVVNVLPTGssGTIEL 273 789**************************************************9987542222289********************************* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksg 188 +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+ GAY48345.1 274 LYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmpqAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESS 372 *********************************************99999************************************************* PP HHHHHHHHHHHTXXXXX CS START 189 laegaktwvatlqrqce 205 + ++kt++a+l+++++ GAY48345.1 373 TLIAQKTTMAALRHLRQ 389 ************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence |
MMAVSSGGSR DSRDSGGQKM IMDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC 60 PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV 120 YENTFFRQQT QNAATLATTD TSCESVVTSG QHHLTPQQQH QHPPRDASPA GLLSIAEETL 180 TEFLSKATGT AVEWVQMPGM KPGPDSIGIV AISHGCTGVA ARACGLVGLD PTRVSRPAVV 240 AEILKDRPSW YRDCRSVEVV NVLPTGSSGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE 300 DGSLVVCERS LNNTQNGPSM PQAPHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS 360 VPEVLRPLYE SSTLIAQKTT MAALRHLRQI SQEVSQPSVT GWGRRPAALR ALSQRLSRGF 420 NEALNGFTDE GWSMLESDGI DDVTVHVNSS PSKMMGVQLS YVNGFPSMSN AVLCAKASML 480 LQDVPPAILL RFLREHRSEW ADSSIDAYSA AAVKAGPCSL PVPRAGNFGG QFLEVIKLEN 540 MAHYREDMIM QSDIFLLQLC SGVDENAVGN CAELVFAPID ASFSDDAPII PSGFRIIPLD 600 SGKDTPSPNR TLDLASALEV GPTGNKASGD SSTQCGSTKS VITIAFQFAF EMHLQENVAS 660 MARQYVRGII ASVQRVALAL SPSRFGSNAG LRPPPGSPEA HTLARWICQS YRCYLGAELL 720 KCEGNESILK TLWHHSDAVL CCSLKALPVF TFANQAGLDM LETTLVALQD ITLEKIFDDS 780 GRKTLCSEFP QIMQQGFMCL QSGICLSSMG RPISYERAVA WKVLNEEENA HCICFMFINW 840 SFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | HD-ZIP family protein |