PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48144.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GATA

Protein Properties

Length: 654aa MW: 70540.5 Da PI: 5.6418

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.8	4.7e-16	317	352	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg GAY48144.1 317 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKG 352 ***99999*********************998 PP
2	GATA	48.6	1.1e-15	506	542	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ GAY48144.1 506 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 542 *****99***********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MPTQTGPANL QTSTADTSLP SLRQQPRPAA AVLTALPTLC EPPSISSSHL PPPCLQPSTT 60 IIATVSIVRH LVSGRPLRDG NSPSQIHSHE GFTQNLQKVF PFGNASKSPS FGPISPMYGQ 120 SQSMNISSQM SGGGAAADED DVSVAADDHH LSYDPHSALE NGIVVVEDVA HDSGYATGGN 180 ELSNSSQLTL SFRGQVYVFD SVTPDKVQAV LLLLGGCELS SSPQGMEVIP HSQRGIADYP 240 AKCTQPQRAA SLDRFRQKRK ERCFDKKVRY SVRQEVALRM QRNKGQFTSA KKCEGGALGW 300 SNAQDPGQDD SPSETSCTHC GISSKSTPMM RRGPSGPRSL CNACGLFWAN KGALRDLGKK 360 MEDQPLTPAE QGEGEVNDSD CGTAAHTDNE LVQAVLLLLG GRDIPTGVPT IEVPYDQSNR 420 GVVDTPKRSN LSRRIASLVR FREKRKERCF DKKIRYSVRK EVAQRMHRKN GQFASLKESS 480 GASPWDSSQD GIQDGTPRPE TVVRRCQHCG VSENNTPAMR RGPAGPRTLC NACGLMWANK 540 GTLRDLSKGG RSLSMDQLEP ETPMDVKPSI MEGEFSGNQD ELGTPEDPAK AVNQGSDNPS 600 IDPDEEDMHG AAEDLTNSLP MGLVHSSADD DEQEPLVELA NPSDTDIDIP SNFD

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MPTQTGPANL QTSTADTSLP SLRQQPRPAA AVLTALPTLC EPPSISSSHL PPPCLQPSTT  60
IIATVSIVRH LVSGRPLRDG NSPSQIHSHE GFTQNLQKVF PFGNASKSPS FGPISPMYGQ  120
SQSMNISSQM SGGGAAADED DVSVAADDHH LSYDPHSALE NGIVVVEDVA HDSGYATGGN  180
ELSNSSQLTL SFRGQVYVFD SVTPDKVQAV LLLLGGCELS SSPQGMEVIP HSQRGIADYP  240
AKCTQPQRAA SLDRFRQKRK ERCFDKKVRY SVRQEVALRM QRNKGQFTSA KKCEGGALGW  300
SNAQDPGQDD SPSETSCTHC GISSKSTPMM RRGPSGPRSL CNACGLFWAN KGALRDLGKK  360
MEDQPLTPAE QGEGEVNDSD CGTAAHTDNE LVQAVLLLLG GRDIPTGVPT IEVPYDQSNR  420
GVVDTPKRSN LSRRIASLVR FREKRKERCF DKKIRYSVRK EVAQRMHRKN GQFASLKESS  480
GASPWDSSQD GIQDGTPRPE TVVRRCQHCG VSENNTPAMR RGPAGPRTLC NACGLMWANK  540
GTLRDLSKGG RSLSMDQLEP ETPMDVKPSI MEGEFSGNQD ELGTPEDPAK AVNQGSDNPS  600
IDPDEEDMHG AAEDLTNSLP MGLVHSSADD DEQEPLVELA NPSDTDIDIP SNFD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	424	429	DTPKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	5e-70	GATA family protein