PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47944.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 350aa MW: 40422.2 Da PI: 9.6781

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.7	3.5e-15	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W+ ++++m+ ++R +k+c +rw +yl GAY47944.1 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNtpLNRDAKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	36	1.7e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + GAY47944.1 59 KGSLTDEEQNLVIHLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 5778****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MKERQRWRAE EDALLRAYVK QYGPKEWSFV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG 60 SLTDEEQNLV IHLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKDSIRIVDP 120 IDEHKYDQIL ETFAEKLVNN HSFVMATSNG GFLHTDPATP PNLLPPWLSN SSSNIRPPSP 180 SVTLSLSPST VAAAPPIPWL QPERGSDNTL VLGNMPPHGS VPICGENLLV SELMECCREL 240 EEGHRAWAAH KKEAAWRLRR VELQLESEKA CRRREKMEEI EAKMKALRDE QRATLDRIEA 300 EYREQIAGLR RDAEAKEQKL AEQWSAKHLR LTKFLEQMGC RPRLSESNGR

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MKERQRWRAE EDALLRAYVK QYGPKEWSFV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG  60
SLTDEEQNLV IHLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKDSIRIVDP  120
IDEHKYDQIL ETFAEKLVNN HSFVMATSNG GFLHTDPATP PNLLPPWLSN SSSNIRPPSP  180
SVTLSLSPST VAAAPPIPWL QPERGSDNTL VLGNMPPHGS VPICGENLLV SELMECCREL  240
EEGHRAWAAH KKEAAWRLRR VELQLESEKA CRRREKMEEI EAKMKALRDE QRATLDRIEA  300
EYREQIAGLR RDAEAKEQKL AEQWSAKHLR LTKFLEQMGC RPRLSESNGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-139	MYB family protein