PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY47143.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 316aa    MW: 35313.4 Da    PI: 5.9669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY47143.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-152370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++  + G g+W+ +ar  g+ R++k+c++rw +yl
       GAY47143.1 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL 70
                     678*******************************************97 PP
2Myb_DNA-binding52.41.2e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++
       GAY47143.1  76 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 119
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MRKPENNGNG NSHSNSNGNK LRKGLWSPEE DDKLMNYMLK NGQGCWSDVA RNAGLQRCGK  60
SCRLRWINYL RPDLKRGAFS PQEEELIIHL HSLLGNRWSQ IAARLPGRTD NEIKNFWNST  120
IKKRLKNLSS SSSTPSPNAS DSLISSDQPN KDQLIAAAGS SSEFMSMPMY NNMDTSSSSS  180
SMMVHMIDSL PMLEHGLNMM GCSSNGYMIN TTSCISQVGM NNCGNFGGEF YVPPLESISC  240
CIEENIKAEN SFYDHRNPNN LNTNNNNANN NKVDQNIGGV GNLLQGEEIK LGEWDFEELM  300
KDVSSFPYLD FYSSWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.15e-66MYB family protein