PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY47057.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 469aa    MW: 52553.2 Da    PI: 7.0811
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY47057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP149.12.9e-461222752134
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............ 88 
                 +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd LGfdk+sktieWLl ++k+aikelt++  s +++c+++++s s+ ++s+             
  GAY47057.1 122 TGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDTLGFDKASKTIEWLLSKSKAAIKELTESLPSVKNSCTSGAKSLSSTSESEVvsgikrikdtgd 220
                 79**************************************************************55555667333333333222222345666667777 PP

         TCP  89 ........kaaksaakskksqksaasa.lnlakesrakarararertrekmrikn 134
                         ++  +   +  ++ks +++ + + +esr karararert ekm+++ 
  GAY47057.1 221 qksalvvdDSLVTLSRGAMNNKSRKAViNPIVRESRDKARARARERTLEKMKMRG 275
                 888899985555544444444444444055566*******************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    
MFPSSSNNCD HHHFPFTNQS ILATENENPS SSQHHHQPSP FLDFPADQDQ PFLPNHDNEF  60
FMTHFFSQHQ ILGCSSDNVA ADETEIKMAS PVEATKKTTT KKKKNGGVNG DEKAQAVQRK  120
RTGKKDRHSK IYTAQGPRDR RMRLSLQIAR KFFDLQDTLG FDKASKTIEW LLSKSKAAIK  180
ELTESLPSVK NSCTSGAKSL SSTSESEVVS GIKRIKDTGD QKSALVVDDS LVTLSRGAMN  240
NKSRKAVINP IVRESRDKAR ARARERTLEK MKMRGLEKSR KCSEEANPND LEQLRPCSPS  300
QEKNSSLKVV AEAEEEEDQM DSVRIIEKFL GFPSSPRSSS IFDYTLHIGE STAASSQQNN  360
PPYSTDYNSY YVLTNMKGST SNLYAKIPGD IFNINPDTCQ EEKSSSIYTS TTNSNEQNPS  420
SDSRILSNSQ EQNPTSIFMT TSNIDSQPQF LEDQFSCNPI DDNRYCSLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101124KKKKNGGVNGDEKAQAVQRKRTGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-38TCP family protein