PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY46961.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 313aa    MW: 33504.2 Da    PI: 8.8251
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY46961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-101155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+e d+ + +a   ++ +   +W++Ia+ ++ g++l+++k ++ 
       GAY46961.1 11 VWTKEQDKAFENALVSYPEDasdRWEKIAADVP-GKSLEEIKQHYE 55
                     7********************************.**********95 PP
2Myb_DNA-binding41.92.3e-13123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
       GAY46961.1 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167
                      6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MTVDEVGSSS VWTKEQDKAF ENALVSYPED ASDRWEKIAA DVPGKSLEEI KQHYELLVDD  60
VNRIESGCVP LPSYNSSSDG SMSHAGDEGT SNGKKGGHYG HFNSESNGNK SSRSDQERRK  120
GIAWTEDEHR LFLLGLDKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR  180
SSIHDITSVN NGDISAPQGP ITGQTNGSGG GGSSGKSSKQ PPQHSAGPPG VGMYGAPTMG  240
QPIGGPLVSA VGTPVNLPAP AHMAYGVRAT VPGTVVPGAP MNVSPMPYPM PHASAHSYPY  300
KQNEGKLRFL GVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-132MYB family protein