PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46794.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 432aa MW: 48988.1 Da PI: 9.765

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.6e-18	172	218	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed l+++v+q+G++ W+ Ia+ m gR +kqc++rw+++l GAY46794.1 172 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHL 218 799**************************9.***********97 PP
2	Myb_DNA-binding	50.3	5.7e-16	224	266	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eEd +l++a+k+ G++ W+ Iar++ gRt++ +k++w+ GAY46794.1 224 KEAWSEEEDMILIQAHKEVGNR-WAEIARRLI-GRTENTIKNHWN 266 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MGSRLENPSS KGILFHNYHN NHDYGLINES TFSNPHHLNR FTIEGSSKSP PLGISTMSFN 60 PLEGYSNGFL GTKGAYTATP LVPNSTNEVL HGPKRRGFWD YSQNFSAHPK LETPNFLPIL 120 MNFQDYGSSS SKLSDEVSCV TGENAYNQDQ KRNKRIPMKR ERKLPKKNNI IKGQWTPQED 180 RMLIRLVAQH GTKKWSVIAK AMTGRVGKQC RERWYNHLKP DIKKEAWSEE EDMILIQAHK 240 EVGNRWAEIA RRLIGRTENT IKNHWNATKR RQQSKRKHKE TAARSTLLQN YIKNVTARKN 300 NKSNKGINAA PDQDNSANFD AAVVNADNNM MMMPTSSQSQ LGITSNFASS LVDQWPQVPV 360 YGHHIEAAIG RLSYENGGGY NFGSSVLDEM PSAGSTVESN FEFELALEID SNYMPEEVKR 420 EMELMEMAYK GL

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MGSRLENPSS KGILFHNYHN NHDYGLINES TFSNPHHLNR FTIEGSSKSP PLGISTMSFN  60
PLEGYSNGFL GTKGAYTATP LVPNSTNEVL HGPKRRGFWD YSQNFSAHPK LETPNFLPIL  120
MNFQDYGSSS SKLSDEVSCV TGENAYNQDQ KRNKRIPMKR ERKLPKKNNI IKGQWTPQED  180
RMLIRLVAQH GTKKWSVIAK AMTGRVGKQC RERWYNHLKP DIKKEAWSEE EDMILIQAHK  240
EVGNRWAEIA RRLIGRTENT IKNHWNATKR RQQSKRKHKE TAARSTLLQN YIKNVTARKN  300
NKSNKGINAA PDQDNSANFD AAVVNADNNM MMMPTSSQSQ LGITSNFASS LVDQWPQVPV  360
YGHHIEAAIG RLSYENGGGY NFGSSVLDEM PSAGSTVESN FEFELALEID SNYMPEEVKR  420
EMELMEMAYK GL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	167	QKRNKRIPMKRERKLPKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	1e-66	MYB family protein