PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46076.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 393aa MW: 44140.6 Da PI: 7.2601

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.4e-14	341	391	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +++W+ eE++ l ++v+q+G+g+Wk+I + + Rt+ ++k++w++++ GAY46076.1 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPgafDERTEVDLKDKWRNVM 391 689******************************99*********985 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MDEDISRWVI EFLLRNSPSD QLINRILAII PISNNNNFRL KKTLLLRSIQ SQLSSDGDAS 60 PSKTVLENLK AIRDLDEKEG IAITRSMEAA IRDAAENTQN DDALRQVVKT CLEEAWASMG 120 PTFLELAAAG GRGGAHVETE DKEKGKGIRK ENVQPKRKHV ASHRRARGPV RIIDNEDLSS 180 DEPCSQYDTL PTPEVNKVQE ALKSSSLELQ AIVTDPLPDA LRQAEAVVSG MARANQIPEP 240 SVGRETNVDK PVLNPSVDAH LEPLQANQGN RKDESCSHQS DVRKSSLMER NSTAHAYEWD 300 DSIDEEPSNQ GNRFHLPSPK RKAVSPLKNH DVTKLARRRK KKKWSLEEED ALRKGVEQFG 360 KGNWKLILKS NPGAFDERTE VDLKDKWRNV MRY

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MDEDISRWVI EFLLRNSPSD QLINRILAII PISNNNNFRL KKTLLLRSIQ SQLSSDGDAS  60
PSKTVLENLK AIRDLDEKEG IAITRSMEAA IRDAAENTQN DDALRQVVKT CLEEAWASMG  120
PTFLELAAAG GRGGAHVETE DKEKGKGIRK ENVQPKRKHV ASHRRARGPV RIIDNEDLSS  180
DEPCSQYDTL PTPEVNKVQE ALKSSSLELQ AIVTDPLPDA LRQAEAVVSG MARANQIPEP  240
SVGRETNVDK PVLNPSVDAH LEPLQANQGN RKDESCSHQS DVRKSSLMER NSTAHAYEWD  300
DSIDEEPSNQ GNRFHLPSPK RKAVSPLKNH DVTKLARRRK KKKWSLEEED ALRKGVEQFG  360
KGNWKLILKS NPGAFDERTE VDLKDKWRNV MRY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	342	KRKAVSPLKNHDVTKLARRRKKK
2	337	343	RRRKKKK
3	338	344	RRRKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	5e-17	MYB_related family protein