PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY45418.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 365aa MW: 40137 Da PI: 7.2406

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY45418.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.8	1.6e-42	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe +r da++s+vyeA+ r+rdPvyG++gv+ +lq+q+++l+aela++++ GAY45418.1 42 PCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQELPEPQRADAVTSMVYEANSRIRDPVYGCAGVVCHLQKQVSELQAELAKAQA 140 7***********************************************************************************************998 PP DUF260 100 e 100 e GAY45418.1 141 E 141 7 PP
2	DUF260	127.7	5.2e-40	205	304	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk lrr+C ++Cvlapyfp ++p++f +vh++FGasn++k l+ lpe +r+da+ss+vyeA+ar+r+Pv+G++g i++lq+q+ +l+aela++++ GAY45418.1 205 PCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQA 303 7**********************************************************************************************9997 PP DUF260 100 e 100 e GAY45418.1 304 E 304 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MQITQQYSTP SFSSPRSINA SSSQSSPSFA TPPSPPSIVL SPCAACKILR RRCVEKCVLA 60 PYFPPTEPQK FVIAHRVFGA SNIIKFLQEL PEPQRADAVT SMVYEANSRI RDPVYGCAGV 120 VCHLQKQVSE LQAELAKAQA ELASMQSQQQ NLIALICMEM AQSQEQVLHL LALPGNLSGH 180 EENINASPSK SSPNLAAPPP IVLSPCAACK SLRRRCDEKC VLAPYFPPTE PQNFIIVHRV 240 FGASNIIKCL QGLPECQRSD AVSSMVYEAN ARIRNPVHGC AGAISQLQKQ VIKLQAELAK 300 AQAETVSMQC QRDNLVALIC KEMTTQFPQE TMNRVLPQQQ FNDDDATTCY LDDKDFASTW 360 DALWT

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MQITQQYSTP SFSSPRSINA SSSQSSPSFA TPPSPPSIVL SPCAACKILR RRCVEKCVLA  60
PYFPPTEPQK FVIAHRVFGA SNIIKFLQEL PEPQRADAVT SMVYEANSRI RDPVYGCAGV  120
VCHLQKQVSE LQAELAKAQA ELASMQSQQQ NLIALICMEM AQSQEQVLHL LALPGNLSGH  180
EENINASPSK SSPNLAAPPP IVLSPCAACK SLRRRCDEKC VLAPYFPPTE PQNFIIVHRV  240
FGASNIIKCL QGLPECQRSD AVSSMVYEAN ARIRNPVHGC AGAISQLQKQ VIKLQAELAK  300
AQAETVSMQC QRDNLVALIC KEMTTQFPQE TMNRVLPQQQ FNDDDATTCY LDDKDFASTW  360
DALWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	8e-63	LBD family protein