PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY45400.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 363aa    MW: 41461.6 Da    PI: 4.8908
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY45400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-0689112226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC ff + G+C+ G +CkF+H+
  GAY45400.1  89 KSILCEFFKA-GQCQKGFKCKFSHD 112
                 6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MPPKQSKADL AKKQKVVEDK TFGLKNKNKS KNVQKYVQSL KQSVEPRPDP TKVAVKKKKE  60
EEKAREKELN DLFKVAVTQP KVPVGVDPKS ILCEFFKAGQ CQKGFKCKFS HDLNIQRKGE  120
KIDIYSDKRD GETMEDWDQE TLEKVVESKK MEYNQNKPTE IVCKYFLEAV EKKQYGWFWV  180
CPNGGKECHY RHALPPGYIL KSQMKALLEE ESDRLPIEDE IEDQRGKLKS TTPMTTELFM  240
QWKKKKMEER NAGLAAQQAE RAKNDRMSGR ELFLSNASLF VDDAEAFEEY HREEEAESNE  300
QKGKDESATS GPSNSSGAVA DSEEILPDDD DDDELDLDEL NELEASLSRT SIQICEPGIE  360
ASS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-170C3H family protein