PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY45136.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 160aa MW: 18267.1 Da PI: 10.3385 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.2 | 1.1e-08 | 18 | 39 | 3 | 24 |
--SHHHHHHHHHHHHHHHHHHH CS SRF-TF 3 ienksnrqvtfskRrngilKKA 24 i k n qvtfskRr+g++KKA GAY45136.1 18 IPKKNNLQVTFSKRRAGVFKKA 39 7789999**************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence |
MEMKKPCAGR QKIAISKIPK KNNLQVTFSK RRAGVFKKAI FSPANKAFSF GHPNVDSILD 60 LYLARNPNPP SESSTDRLIE AHRNANIREL NMQLTQKHGE VLSEIRKASC RQCWWEAPIN 120 ELGLHELEQL KTAMEELKKN VEQQANKILI DSKNNPSPFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-37 | M-type_MADS family protein |