PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY45101.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 535aa MW: 58929 Da PI: 8.8294

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY45101.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.5e-17	60	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av + g++Wk+Ia+ ++ R++ qc +rwqk+l GAY45101.1 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 106 688***************************.**********986 PP
2	Myb_DNA-binding	59.1	1e-18	112	158	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++ ++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l GAY45101.1 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 158 79****************************.***********97 PP
3	Myb_DNA-binding	56.1	8.8e-18	164	207	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++ GAY45101.1 164 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNSIKNHWNS 207 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MAEVKLEEEC CLENKQLTAA SSSSLSEGSS SAILKSPGVS SPATTSPTHR RTTGPIRRAK 60 GGWTPEEDET LRNAVSTFKG KSWKKIAEFF PDRSEVQCLH RWQKVLNPDL VKGPWTQEED 120 DKITELVSKY GPTKWSVIAK SLPGRIGKQC RERWHNHLNP DIKKDAWTLE EELALMNAHR 180 IHGNKWAEIA KVLPGRTDNS IKNHWNSSLK KKLDFYLATG KLPPVAKSSL QNGTKDTSQS 240 TATENLVCSN KDSDSAAQTS SGTTDIGKPD EEGGKDRLEP SALVPDMATS SSIRPNESMD 300 SEGLECNPES PNIDLTCSES MPRLENCTVN CEFVEDKVTG TQKQVGTPTY GSLYYVPPEL 360 KSFILLDKDT SNRHSVHHDY NSSPITSPIS FFTPPCVKGS GLSSPSPESI LKIAAKTFPY 420 TPSIFRKRKP VSQAQLDAKK IGKVDGVSGS DRFCLSGKQE SNQNNSKNSR FQDASPSGSI 480 EPTGMTFNAS PPYRLRSKRT AVFKSVERQL EFTSNKEKGD RNANFVKQSV KGTSH

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MAEVKLEEEC CLENKQLTAA SSSSLSEGSS SAILKSPGVS SPATTSPTHR RTTGPIRRAK  60
GGWTPEEDET LRNAVSTFKG KSWKKIAEFF PDRSEVQCLH RWQKVLNPDL VKGPWTQEED  120
DKITELVSKY GPTKWSVIAK SLPGRIGKQC RERWHNHLNP DIKKDAWTLE EELALMNAHR  180
IHGNKWAEIA KVLPGRTDNS IKNHWNSSLK KKLDFYLATG KLPPVAKSSL QNGTKDTSQS  240
TATENLVCSN KDSDSAAQTS SGTTDIGKPD EEGGKDRLEP SALVPDMATS SSIRPNESMD  300
SEGLECNPES PNIDLTCSES MPRLENCTVN CEFVEDKVTG TQKQVGTPTY GSLYYVPPEL  360
KSFILLDKDT SNRHSVHHDY NSSPITSPIS FFTPPCVKGS GLSSPSPESI LKIAAKTFPY  420
TPSIFRKRKP VSQAQLDAKK IGKVDGVSGS DRFCLSGKQE SNQNNSKNSR FQDASPSGSI  480
EPTGMTFNAS PPYRLRSKRT AVFKSVERQL EFTSNKEKGD RNANFVKQSV KGTSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-166	MYB family protein