PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY45062.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-other
Protein Properties Length: 342aa    MW: 39080.1 Da    PI: 5.9058
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY45062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-09273321654
                 S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 +++k q+++Le ++++++ p+ +++  + + ++L+ r++  WF  +Ra 
  GAY45062.1 273 RLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAE 321
                 57899******************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MALTLSTSIC TSTSRAVHRL SPSQYLRLFP GHHRKPTNLL LPRHPPTRFT LAFSRRRNNN  60
PITISSSKKK KKSLPRKDIK DSDEEDDPFE ALFSLLEEDL KNDDSTIDDD DEEIDEEDLD  120
KLATELAEAL GDVDMDMSDT ATDGTESDNN EAHKEDGEDE EEEEEREVRL KNWQLRKLAY  180
ALKTGRRKVS VKSLAAELCL DRAVVLEMLG DPPPNLLMLS ATLPDKPTPT VLVNEVKHSE  240
PIVAETTVHA VEPKSKVEEP VHDRQHRWSA QKRLKKVQVK TLEMVYRRSK RPTDAMISSI  300
VQVTNLPRRR IVKWFEDKRA EEGVPECRKP FQRSDPKTVF SG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15572RRRNNNPITISSSKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.15e-67HB-other family protein