PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44243.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 534aa MW: 60232.9 Da PI: 8.342

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.4	7.4e-42	203	278	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvC+vhsk+p+v+v+g eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q GAY44243.1 203 CQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQ 278 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MCHQMLSRHF HIAYFEQLRY CFKMESWIYG SEGKGILYSD EVDSSVDPFT RSRKTLMAWE 60 SKPSYNFDIN KLFSDSDDVE NMEFMDLCFT DLTRKPCHSN SSLGTPNGEV GSDTNERLTT 120 TPCMVTSNSF CGAESGSKIS SSCMKSISQD SALIDLKLGR LVDGRDKQCG KLFKERSVAS 180 SAHPSLMAKK VRTTSSCSQT PLCQVYGCNK DLSSSKDYHK RHKVCDVHSK TPKVIVNGNE 240 QRFCQQCSRF HLLAEFDDSK RSCRRRLAGH NERRRKPQFN IHSDRSRKLL QLYQDMHHAG 300 SELPWTSLQN GTSFVYPDML PGGILFPERY EPVKQIKFSE RPPYSPQLAV PNTNEQLLTK 360 SSLYQGNKKQ HRLAIPLDTA LTFQDSSGIS HSSGALSLLS AQSQSMPNHL SGIPMARPLI 420 SQVSHTHLNL GQNFVKTSGT TPLGKYETKG FYTSGMNSMD GAQMRSLMVP DAGHAFELKV 480 ETDEVSQESD FFKDKNCYSP EQGFTVDLIQ LSSHLKRVEQ QRNSIQPKQH TDDL

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MCHQMLSRHF HIAYFEQLRY CFKMESWIYG SEGKGILYSD EVDSSVDPFT RSRKTLMAWE  60
SKPSYNFDIN KLFSDSDDVE NMEFMDLCFT DLTRKPCHSN SSLGTPNGEV GSDTNERLTT  120
TPCMVTSNSF CGAESGSKIS SSCMKSISQD SALIDLKLGR LVDGRDKQCG KLFKERSVAS  180
SAHPSLMAKK VRTTSSCSQT PLCQVYGCNK DLSSSKDYHK RHKVCDVHSK TPKVIVNGNE  240
QRFCQQCSRF HLLAEFDDSK RSCRRRLAGH NERRRKPQFN IHSDRSRKLL QLYQDMHHAG  300
SELPWTSLQN GTSFVYPDML PGGILFPERY EPVKQIKFSE RPPYSPQLAV PNTNEQLLTK  360
SSLYQGNKKQ HRLAIPLDTA LTFQDSSGIS HSSGALSLLS AQSQSMPNHL SGIPMARPLI  420
SQVSHTHLNL GQNFVKTSGT TPLGKYETKG FYTSGMNSMD GAQMRSLMVP DAGHAFELKV  480
ETDEVSQESD FFKDKNCYSP EQGFTVDLIQ LSSHLKRVEQ QRNSIQPKQH TDDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	6e-53	SBP family protein