PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44126.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 480aa MW: 52509.4 Da PI: 7.519

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.1	4.4e-42	186	262	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC dls+ak+yhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+ GAY44126.1 186 CQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP 262 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MSSMMEWNGK TPLQWDWENL IMFNATAAEN PRKTRQIEWE IDGDGGIDST SFFSSGGGDG 60 SGGSISDMGL ASLSKSSKSA SNNSSSMGET KTSKFRLEAS DDVLEDFDLK KEFAKAEPTG 120 GSPTLEASVG SGEPLLGLKL GKRMYFEDIS AGGNGKNSSF PAVCGSYSTS AKRSRSNPQT 180 TQAALCQVEG CGLDLSSAKD YHRKHRVCEN HSKSPKVIVG GLERRFCQQC SRFHGLSEFD 240 EKKRSCRRRL SDHNARRRKS QPEAVRLNPA RLSSSLYDGK QQMTLVWNSV PFVHKNPTET 300 FTWEGTCVSK STQTKGYASK SAKGEGTDVL LQLHGNQPPN SVPARRDDSN GLLLSKAKVT 360 MAEVLDQGPE ESMISFDLGA TQDCHSALSL LSKTSWGICE PKKVSQQHPT STSLTNIPHA 420 VMPAMAQGSP FASSEYRQIG KLSTEFQVHA SSFHQDEGNY IQEIQLYRAP YESDFYPTVD

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MSSMMEWNGK TPLQWDWENL IMFNATAAEN PRKTRQIEWE IDGDGGIDST SFFSSGGGDG  60
SGGSISDMGL ASLSKSSKSA SNNSSSMGET KTSKFRLEAS DDVLEDFDLK KEFAKAEPTG  120
GSPTLEASVG SGEPLLGLKL GKRMYFEDIS AGGNGKNSSF PAVCGSYSTS AKRSRSNPQT  180
TQAALCQVEG CGLDLSSAKD YHRKHRVCEN HSKSPKVIVG GLERRFCQQC SRFHGLSEFD  240
EKKRSCRRRL SDHNARRRKS QPEAVRLNPA RLSSSLYDGK QQMTLVWNSV PFVHKNPTET  300
FTWEGTCVSK STQTKGYASK SAKGEGTDVL LQLHGNQPPN SVPARRDDSN GLLLSKAKVT  360
MAEVLDQGPE ESMISFDLGA TQDCHSALSL LSKTSWGICE PKKVSQQHPT STSLTNIPHA  420
VMPAMAQGSP FASSEYRQIG KLSTEFQVHA SSFHQDEGNY IQEIQLYRAP YESDFYPTVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	259	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	4e-86	SBP family protein