PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY43839.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YC
Protein Properties Length: 237aa    MW: 27138 Da    PI: 5.0505
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY43839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC129.11.5e-4065167299
       NF-YC   2 lksfwekq...iek..atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                 ++sfwe+q   ie+  ++ ++nh lPlarikk++k+ e+vkm +a++P++++kace+fi+eltlr+wl++e+ krrtl+++dia a+   + fdfl+d 
  GAY43839.1  65 VQSFWEQQksdIENatTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDF 163
                 589****98886651145789****************************************************************************** PP

       NF-YC  96 vprd 99 
                 vp d
  GAY43839.1 164 VPYD 167
                 *987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MRRPKVDLNV SEDDFTPSST PSQDAAPVHN FMPMTPFMLP SHQPTEEDEE EAHSLALMLK  60
QRQLVQSFWE QQKSDIENAT TESLRNHLLP LARIKKVMKS REEVKMTTAD SPAVFAKACE  120
MFIMELTLRA WLQTEDGKRR TLQRCDIARA LRLDELFDFL IDFVPYDCRQ DDEAVEIRPA  180
NKQHFPGVHV SANFMTPGMI YPKVQQQVMM KPSPSIAEFD YGSTAKAMAE ERAAEMG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.11e-39NF-YC family protein