PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43461.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 382aa MW: 43506.6 Da PI: 9.4734

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.6e-06	118	141	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg++F +++ L++H + H GAY43461.1 118 YVCGVCGRRFYSNEKLVNHFKQiH 141 9******************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
TKFTRLETQN PFVSLYRRFH LEPNSQNPAS TLEPKTVQNN VGVFWDLDNK PPNSVPPFEA 60 AIKLKKSISS LGVVKYMVAY ANSHAFSYVP QVVREQREER KLFNQLENRG VIKPAELYVC 120 GVCGRRFYSN EKLVNHFKQI HEREQKKRLN QIESARGKRR VHLVGKYSMK MEKYKRAARA 180 ILTPKIGYGL ADELKRAGFW VRTVSDKPQA ADVALRNHMV DMMDKRHVEC LVIVSDDSDF 240 VDVLQEAKYR CLKTVVVGDI NDGALKRIAD ASFSWRDILM GKAKKEAVSV VGKWKDRDIL 300 KRLEWTYSPE VEKKAHDWAD GNKDADIDDA TGANNADCIP KEDNGAWQLV VICVTDSVTS 360 HNLGERDSQL RGGLEWDGIP TT

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

TKFTRLETQN PFVSLYRRFH LEPNSQNPAS TLEPKTVQNN VGVFWDLDNK PPNSVPPFEA  60
AIKLKKSISS LGVVKYMVAY ANSHAFSYVP QVVREQREER KLFNQLENRG VIKPAELYVC  120
GVCGRRFYSN EKLVNHFKQI HEREQKKRLN QIESARGKRR VHLVGKYSMK MEKYKRAARA  180
ILTPKIGYGL ADELKRAGFW VRTVSDKPQA ADVALRNHMV DMMDKRHVEC LVIVSDDSDF  240
VDVLQEAKYR CLKTVVVGDI NDGALKRIAD ASFSWRDILM GKAKKEAVSV VGKWKDRDIL  300
KRLEWTYSPE VEKKAHDWAD GNKDADIDDA TGANNADCIP KEDNGAWQLV VICVTDSVTS  360
HNLGERDSQL RGGLEWDGIP TT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-140	C2H2 family protein