PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY43390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 28379 Da PI: 6.7881 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.1 | 1e-10 | 73 | 120 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR+++ + + Lr+llP ++K s ++ +Av+YIk+Lq GAY43390.1 73 RDIERHRRQEMSTLYRSLRSLLPLeY---LKGKRSMSDHMNEAVNYIKNLQ 120 679*********************77...9********************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence |
MDYIPSLVFP FDRTDPHDDQ LPCQQQYHTA GQQNDNQLIF NPLEYGSDLK RPETTNIFAV 60 NDDNSKKMKI MRRDIERHRR QEMSTLYRSL RSLLPLEYLK GKRSMSDHMN EAVNYIKNLQ 120 NRIQKLSEKR DELRRLSNSS SSPYYSTTSE SECSQTHINI LEDSVTVKPC LAGVEVAINT 180 SFRKGIPLSQ VVALLTEEGL TVVNCISTKI NERLLHNIES EVNDGGRNID PFELQQKIMK 240 LTSPSSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25410.1 | 4e-40 | bHLH family protein |