PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43377.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 26442.5 Da PI: 8.8149

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43377.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.7	9.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss GAY43377.1 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59 79***********************************************96 PP
2	K-box	55	3.6e-19	114	197	9	84
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK........nellleqieelqkke 84 e ++++ ++e +++ ++e L+ +R+llG++Le++++ eLqqLe+qLe+sl++iR++K n+l++eqie+l++k GAY43377.1 114 IVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKfrnlvfsqNQLFREQIEKLKEKC 197 667889******************************************************954444444667777777777764 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSC 60 RWFCFVEFLV LIDLSRDLAD SCTLSVSPQS DLSINKTIER YQKKTKDIGI NSKIVEDHSQ 120 HAKEETSNMM TKLEFLEVAK RKLLGDGLEP CTIDELQQLE NQLERSLSRI RARKFRNLVF 180 SQNQLFREQI EKLKEKCGMQ PRQASEEQEV YMDVETQLSI GPPERRVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22950.1	3e-71	MIKC_MADS family protein