PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42742.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 512aa MW: 53040.5 Da PI: 8.5371

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42742.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GAY42742.1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	12.2	0.00058	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s++k H +++ GAY42742.1 137 WKCDKCSKKYAVQSDYKAHSKVC 159 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MPVDLENSST ASGEASVSST GNQNPPPKST NKKKRSLPGT PDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSNKEVKKR VYVCPEKSCV HHDPTRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DYKAHSKVCG TKEYKCDCGA VFSRRDSFIT 180 HRAFCDMLTK ESAKVQSEEP NLIEGMVKPN TESDPKVQPV DSSTSTPPTA ALAPALTKST 240 AAVSSSVSPG QSSEMPENSP QVVEEAPLSA ALNGSCSSSS SSSSTGTKSS SVFASLFASS 300 TASATLQPSQ TPVLTDLMRA MAPPERPTDV GSSSSTDPIA LCLSTNPGSS IFGSGGQEPR 360 QYSQPAMSAT ALLQKAAQMG AAASNATLLR GFGIVSSSSS ASAHEDSVRW SERSFESDNV 420 SLPGLGLGLP CEGSSGLKEL MMGTPSVFGP NKPTLDFLGL GMAAGGATPG VGRSALVPPA 480 GGALDVAAGA ASLGGGGGGG GEIAGKDIGT SS

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MPVDLENSST ASGEASVSST GNQNPPPKST NKKKRSLPGT PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSNKEVKKR VYVCPEKSCV HHDPTRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DYKAHSKVCG TKEYKCDCGA VFSRRDSFIT  180
HRAFCDMLTK ESAKVQSEEP NLIEGMVKPN TESDPKVQPV DSSTSTPPTA ALAPALTKST  240
AAVSSSVSPG QSSEMPENSP QVVEEAPLSA ALNGSCSSSS SSSSTGTKSS SVFASLFASS  300
TASATLQPSQ TPVLTDLMRA MAPPERPTDV GSSSSTDPIA LCLSTNPGSS IFGSGGQEPR  360
QYSQPAMSAT ALLQKAAQMG AAASNATLLR GFGIVSSSSS ASAHEDSVRW SERSFESDNV  420
SLPGLGLGLP CEGSSGLKEL MMGTPSVFGP NKPTLDFLGL GMAAGGATPG VGRSALVPPA  480
GGALDVAAGA ASLGGGGGGG GEIAGKDIGT SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	C2H2 family protein