PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY42716.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 495aa    MW: 54592 Da    PI: 5.5427
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY42716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.61e-1061284952374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +++L++cA+ v+s +  +a + L rl+  +  +g+p++R+a yfteAL +rl++   +  k++++ e++    ++ + ++k++++++P+ kf++ltaNq
  GAY42716.1 128 TKALIDCARLVES-EPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQ---RAEKSITTLEAN---CEDCILSFKTLNDACPYSKFAYLTANQ 219
                 689********99.5667778899*****************************9...555555555555...999************************ PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aIlea+e+++++Hi+Df+i qG+QW  LlqaLa+Rp g+p ++Ri g+ +p+ g   + +l +tg+rL++fA +l +++ef++ +   + +l+ +++rv
  GAY42716.1 220 AILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPvKVRISGIPAPALGksPAASLLATGDRLREFAGSLSLNLEFEP-ILIPIRKLRASSFRV 317
                 ************************************87777*********9999889999***********************.6889*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +p+Eal+Vn++lql +lld++    +   + L++ ksl+P+vv+++e ea++n++ Fl+rf +al+yy+a+f+sle ++ ++s+er  vEr++lg++i 
  GAY42716.1 318 DPNEALVVNFMLQLNSLLDDNRLAVE---NALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIA 413
                 ******************87766555...8********************************************************************* PP

        GRAS 296 nvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                 n++a e++  +rer e  e+Wr  +e++ F+ +p+s++a +qa+ ll +++ s  ++++++++ l+ l Wk+ pL++vS+Wr
  GAY42716.1 414 NLLAPEKQGaKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNySPLFTLNQSHDNLLtLSWKKVPLLTVSSWR 495
                 ****9998769****************************************999****987666555**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MESLMNTAHS TDSSNLPPAC DAWQNNASDF GLYATDPFTS CPSQLGSPTS ELNRVVFADS  60
QKTILPAWPP SPPPPLVPPE SAVKELAKQV SPSPSPSPSP SRVPPPNDAV GASTSTGFAE  120
AELAQPLTKA LIDCARLVES EPDKAVKSLV RLRGSVCAHG NPTERVAYYF TEALYKRLTQ  180
RAEKSITTLE ANCEDCILSF KTLNDACPYS KFAYLTANQA ILEATENASH IHIVDFGIVQ  240
GIQWSFLLQA LANRPTGKPV KVRISGIPAP ALGKSPAASL LATGDRLREF AGSLSLNLEF  300
EPILIPIRKL RASSFRVDPN EALVVNFMLQ LNSLLDDNRL AVENALQMAK SLNPNVVTLA  360
EYEANLNRTG FLARFKNALK YYTAVFESLE PNMTTDSDER FQVERQILGP RIANLLAPEK  420
QGAKRERVED IENWRIFMEN SDFEGIPFSH YALSQAEILL WNYNYSPLFT LNQSHDNLLT  480
LSWKKVPLLT VSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-168GRAS family protein