PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42524.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 492aa MW: 53064.6 Da PI: 6.8091

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.8e-12	136	160	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ GAY42524.1 136 GEKDCAYYMQTRTCKFGDTCKFDHP 160 7889********************8 PP
2	zf-CCCH	37	5.9e-12	218	242	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++GtCk+G++CkF H++ GAY42524.1 218 EPPCAFYLKNGTCKFGATCKFDHPK 242 79*********************96 PP
3	zf-CCCH	36.6	7.4e-12	300	322	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++tG CkyG++C+++H++ GAY42524.1 300 DCPFYLKTGSCKYGSTCRYNHPE 322 7********************96 PP
4	zf-CCCH	38.6	1.7e-12	384	405	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG Ck+G++CkF+H+ GAY42524.1 384 ECDYYMKTGVCKFGEKCKFHHP 405 7********************8 PP
5	zf-CCCH	39.8	7.6e-13	435	456	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p GAY42524.1 435 CPYYMKTGTCKYGATCKFDHPP 456 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MANHLYGYSS SYGAGAGGGG GTPKSSAALS GVYTSRSLAD PYHLSESTLR YDPDHSIYDS 60 FRYSGYLSSQ AQQPWPPGVD PTDHLKRPSE ALYHPTLLGT HTSIGQSEAW YSTNSLAKRP 120 RIESASNLPV YPQRPGEKDC AYYMQTRTCK FGDTCKFDHP IWVPEGGIPD WKEVPVIASS 180 ESLPERPGEP DCPVSRISRV LSDSGNGDVS ALPERPSEPP CAFYLKNGTC KFGATCKFDH 240 PKDFQLPSVG QENGIGEQNE SVIKTDETTG LLNPGMSLFS HAPAMLHNSK GLPIRPGELD 300 CPFYLKTGSC KYGSTCRYNH PERTAINPPA AAIVHPLITS PAASLGISVV SPAASLYQTI 360 DPRLAQATLG VSPSLYPQRP GQMECDYYMK TGVCKFGEKC KFHHPIDRSA AKTPSQETVK 420 LTLAGLPRRE GAVHCPYYMK TGTCKYGATC KFDHPPPGEV MAISALDGTS TAVGEEVKGD 480 EKESEVAPST AV

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MANHLYGYSS SYGAGAGGGG GTPKSSAALS GVYTSRSLAD PYHLSESTLR YDPDHSIYDS  60
FRYSGYLSSQ AQQPWPPGVD PTDHLKRPSE ALYHPTLLGT HTSIGQSEAW YSTNSLAKRP  120
RIESASNLPV YPQRPGEKDC AYYMQTRTCK FGDTCKFDHP IWVPEGGIPD WKEVPVIASS  180
ESLPERPGEP DCPVSRISRV LSDSGNGDVS ALPERPSEPP CAFYLKNGTC KFGATCKFDH  240
PKDFQLPSVG QENGIGEQNE SVIKTDETTG LLNPGMSLFS HAPAMLHNSK GLPIRPGELD  300
CPFYLKTGSC KYGSTCRYNH PERTAINPPA AAIVHPLITS PAASLGISVV SPAASLYQTI  360
DPRLAQATLG VSPSLYPQRP GQMECDYYMK TGVCKFGEKC KFHHPIDRSA AKTPSQETVK  420
LTLAGLPRRE GAVHCPYYMK TGTCKYGATC KFDHPPPGEV MAISALDGTS TAVGEEVKGD  480
EKESEVAPST AV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-178	C3H family protein