PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42438.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 389aa MW: 43539.1 Da PI: 4.777

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42438.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.4e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl GAY42438.1 16 RGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	52.4	1.2e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia+ ++ gRt++++k+ w+++l GAY42438.1 69 RGNFTQEEEDTIIRLHESLGNR-WSKIASQLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MGKGRAPCCD KSQVKRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTQEEEDTI IRLHESLGNR WSKIASQLPG RTDNEIKNVW NTHLKKRLSF 120 RDVKKDQESK ESSSISSPSS SSSSTIISSG KRRADTELDE HQCDQNNYVP KKPREGHGSM 180 TVSEKLVQQS SETEESNQIN TSKGVVMMTK ELLDSSCSSD NSVVSNSSQV DATRPKDQMG 240 TSQFGFSEPY DVAIGLNNLE EVNKPEIISI SDTGLEIPLE CDFDFWSMLD NLGPFQSHEV 300 EASQSTSFGE ASDNSKEVDS RTWFQYLENE LGLEATTEDE IQNSAKVAAA ATADPIPQET 360 YETLLKPEVD PGVTYFQLWN ASLQSSVCE

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MGKGRAPCCD KSQVKRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTQEEEDTI IRLHESLGNR WSKIASQLPG RTDNEIKNVW NTHLKKRLSF  120
RDVKKDQESK ESSSISSPSS SSSSTIISSG KRRADTELDE HQCDQNNYVP KKPREGHGSM  180
TVSEKLVQQS SETEESNQIN TSKGVVMMTK ELLDSSCSSD NSVVSNSSQV DATRPKDQMG  240
TSQFGFSEPY DVAIGLNNLE EVNKPEIISI SDTGLEIPLE CDFDFWSMLD NLGPFQSHEV  300
EASQSTSFGE ASDNSKEVDS RTWFQYLENE LGLEATTEDE IQNSAKVAAA ATADPIPQET  360
YETLLKPEVD PGVTYFQLWN ASLQSSVCE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	3e-76	MYB family protein