PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42188.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 622aa MW: 69877 Da PI: 4.8606

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.5	1.5e-05	428	461	17	55
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 N++f Lr+++P + ++Ka+iL +++Y+k+L+ GAY42188.1 428 NEKFMVLRSMVPYiS------EVDKASILSDTIKYLKKLE 461 99*********66......8*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MVPRVLEWGD GYYNGDIKTR KTMQAMELTP DRIGLQRSKQ LRELYESLLK GESELAYKRP 60 SAALSPEDLT DAEWYYLVCM SFVFSSGQGL PGRALANSET IWLCNAQCAD SKVFSRSLLA 120 KTVICFPHLD GVIELGVTEL VPEDPSLLQH IKASLLDFSK PFCSEKSSSP PYDEDDDSDP 180 LCAKVSHEIL DTVALESLYS PGEENKFDGE GVYELHGNIN EELHLDSADE CSKGCEHNHQ 240 TEESFMVDGI NGAASQVQSW HFVDDDLSNG IPDSMHSSDH KSESLVNQAE GFPSSKDENM 300 SHIQLKELQE GNHTKPSLLD LGIDDGAHYR KTLSAIFGSS NRLTENPCFL SVEHKSSFVS 360 WKKGGMVKRY WPGIQQNLLK KILFSVPLMH GGCTHRSQKE ICRKYCLVTM ESDNFCEEHI 420 SSDKRTENEK FMVLRSMVPY ISEVDKASIL SDTIKYLKKL EARVEELESC MYSVDSEPRP 480 KRNYTEMVEQ TSDNYDNKKL DNHKKPWIKK RKACDIDETD PELNKFVPKD GLADVKVSIQ 540 EMDVLIEMRC PSREYILLDI MDAINNLHLD AYSVVSSNLD GVLTLALKST FRGAAIAPAG 600 IIEQALWKIA GSGKMTTIAQ TM

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MVPRVLEWGD GYYNGDIKTR KTMQAMELTP DRIGLQRSKQ LRELYESLLK GESELAYKRP  60
SAALSPEDLT DAEWYYLVCM SFVFSSGQGL PGRALANSET IWLCNAQCAD SKVFSRSLLA  120
KTVICFPHLD GVIELGVTEL VPEDPSLLQH IKASLLDFSK PFCSEKSSSP PYDEDDDSDP  180
LCAKVSHEIL DTVALESLYS PGEENKFDGE GVYELHGNIN EELHLDSADE CSKGCEHNHQ  240
TEESFMVDGI NGAASQVQSW HFVDDDLSNG IPDSMHSSDH KSESLVNQAE GFPSSKDENM  300
SHIQLKELQE GNHTKPSLLD LGIDDGAHYR KTLSAIFGSS NRLTENPCFL SVEHKSSFVS  360
WKKGGMVKRY WPGIQQNLLK KILFSVPLMH GGCTHRSQKE ICRKYCLVTM ESDNFCEEHI  420
SSDKRTENEK FMVLRSMVPY ISEVDKASIL SDTIKYLKKL EARVEELESC MYSVDSEPRP  480
KRNYTEMVEQ TSDNYDNKKL DNHKKPWIKK RKACDIDETD PELNKFVPKD GLADVKVSIQ  540
EMDVLIEMRC PSREYILLDI MDAINNLHLD AYSVVSSNLD GVLTLALKST FRGAAIAPAG  600
IIEQALWKIA GSGKMTTIAQ TM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-132	bHLH family protein