PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY42010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 21815.1 Da PI: 9.5779 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 86.1 | 4.9e-27 | 23 | 99 | 24 | 100 |
DUF260 24 aeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++++++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+++ GAY42010.1 23 SKRAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAH 99 56799*******************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence |
MFASRKQLNG GSLLSRVALK TSSKRAAHFA AVHKVFGASN VSKLLLHIPV HKRLDAVVTI 60 CYEAQARLRD PVYGCVAHIF ALQQQVVNLQ AELSYLQAHL ATLELPSPPP PPPSQNQMTA 120 PPLSISDLPS ASSMPATYDL STLFDPMVQP APWAMQQRQM DPRQFGGGDL QAMARELLHR 180 QGSPPPGSMP CTDASSSPSL SK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 7e-70 | LBD family protein |