PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY42009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22500.5 Da PI: 6.885 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.8 | 5.9e-41 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+k+Cv+apyf a+q + +fa+vhk+FGasn +kll+++p+++r da+ sl+yeA ar+rdP+yG+vg+i +lqqq+ +l+aela ++ GAY42009.1 11 PCGACKFLRRKCVKGCVFAPYFDADQgTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQVVNLQAELAFTQ 109 7*************************88********************************************************************998 PP DUF260 99 ee 100 ++ GAY42009.1 110 AR 111 75 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MMMSANNGGG PCGACKFLRR KCVKGCVFAP YFDADQGTTH FAAVHKVFGA SNASKLLSRI 60 PPHKRLDAVV SLCYEAMART RDPIYGCVGH IVALQQQVVN LQAELAFTQA RLSILQRLPM 120 ASAAQDQSTS PCSLYSSSEM VSTADMASGY NISMQFDPLQ QQQTSTDQTS SFNPFDQEID 180 DGDLQALARE FVSKYLPGVK LQPSNSD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 4e-58 | LBD family protein |