PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41909.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 394aa MW: 44717.7 Da PI: 6.5623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41909.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	258	280	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H GAY41909.1 258 YKCETCKKVFKSYQALGGHRASH 280 9************9999998887 PP
2	zf-C2H2	12	0.00063	316	338	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H rtH GAY41909.1 316 HECPVCFRVFSSGQALGGHKRTH 338 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MEKHKCRLCF KNFSNGRALG GHMRSHMLNL PIPQKIQEEE EEREHRPHHQ QLSFEIETES 60 ASSPSSSTSP SEEDDEEKSL FYGLRENPKR SIRLVDPEFS FGVVDASAAA AAAASASVVL 120 QDRESETESS KNPTRRRSKR TRKLEQQHRQ ELDIIKKLKL NKSKNTIESS SWGHEPEPVS 180 SISDTTTEED VAYCLMMLSR DKWKRKEKQQ QHHHDLIMFR QQDDDEYEDE EAEKSMDETD 240 ESEEFKSFNN KNRSRGKYKC ETCKKVFKSY QALGGHRASH KKIKFYTPVQ ETELDQENAG 300 ASINLASPPL SVKKVHECPV CFRVFSSGQA LGGHKRTHVT GLVASTSARS ASASTKLGEN 360 LIDLNLPAPI DDDDISQIEL SAVSDAEFVN HIKR

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MEKHKCRLCF KNFSNGRALG GHMRSHMLNL PIPQKIQEEE EEREHRPHHQ QLSFEIETES  60
ASSPSSSTSP SEEDDEEKSL FYGLRENPKR SIRLVDPEFS FGVVDASAAA AAAASASVVL  120
QDRESETESS KNPTRRRSKR TRKLEQQHRQ ELDIIKKLKL NKSKNTIESS SWGHEPEPVS  180
SISDTTTEED VAYCLMMLSR DKWKRKEKQQ QHHHDLIMFR QQDDDEYEDE EAEKSMDETD  240
ESEEFKSFNN KNRSRGKYKC ETCKKVFKSY QALGGHRASH KKIKFYTPVQ ETELDQENAG  300
ASINLASPPL SVKKVHECPV CFRVFSSGQA LGGHKRTHVT GLVASTSARS ASASTKLGEN  360
LIDLNLPAPI DDDDISQIEL SAVSDAEFVN HIKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	159	RRRSKRTRKLEQQHRQELDIIKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-52	C2H2 family protein