PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41890.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 328aa MW: 36785.4 Da PI: 8.8464

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.5	5.9e-41	181	258	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ GAY41890.1 181 RCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ 258 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MVDYEWGNPS TILLTGDEAT QEPNQSRQIF DHYTTQEPFS QHSTNNNNYF HQPITNTTLY 60 HHHHQQQQPP PPPPPPHHHH HHNNNNNNSN NAHSLFDPRA YTSASSYAPT HHSMLSIDAA 120 SGGYFMIPKT EEVSRPVDNF ASRIGLNLGG RTYFSSADDD FVSRLYRRPR PGEAGSANIP 180 RCQAEGCSAD LTHAKHYHRR HKVCEFHSKA STVIAAGLTQ RFCQQCSRFH LLSEFDNGKR 240 SCRKRLADHN RRRRKSQQQP TTTPLQDNQK SQLEPEILAK SPPDSGAHSS SSVTVAVSPP 300 RMSLDCFRQK PSQATASTSA GSLFFSSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-84	SBP family protein