PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41729.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 430aa MW: 47452.4 Da PI: 10.0156

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	199	221	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F ++L+ H+ + H GAY41729.1 199 SCPECGQIFMKAETLELHQAVrH 221 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MAKPRNQRKH LTEMQQSKKN QPQKSERPPP SWAAVRGIFT CKNLQAPQQQ QKKPEQHQQQ 60 EKKQKQKQQQ DQATDETSKK CKKMKCSGSL CSNTKVMQRP EAAASPELQR KRASMGSSGK 120 NEPSSRSMKT PLHELNGANG VISSTNSSLS VSSNSSIAGG GSFRGMPFRR LSGCYECRMV 180 VDPVLGFARD PSLRGSICSC PECGQIFMKA ETLELHQAVR HAVSELGPED TSKNIVEIIF 240 QSSWLKKQTP ICKIDRILKV HNTQRTIAKF EEYRDSIKAK ATKLPKKHPR CIADGNELLR 300 FHCTTFTCSL GLNGSSNLCN SIPQCNVCSI IKNGFKVTQE TNKGLRGNGI LTTATSGKAH 360 DKAGVEDGSD ARAMLVCRVI AGRVKKSMEG NLEEYDSVAG AMGMYSNLDE LYVFNPKAIL 420 PCFVVIYSGF

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MAKPRNQRKH LTEMQQSKKN QPQKSERPPP SWAAVRGIFT CKNLQAPQQQ QKKPEQHQQQ  60
EKKQKQKQQQ DQATDETSKK CKKMKCSGSL CSNTKVMQRP EAAASPELQR KRASMGSSGK  120
NEPSSRSMKT PLHELNGANG VISSTNSSLS VSSNSSIAGG GSFRGMPFRR LSGCYECRMV  180
VDPVLGFARD PSLRGSICSC PECGQIFMKA ETLELHQAVR HAVSELGPED TSKNIVEIIF  240
QSSWLKKQTP ICKIDRILKV HNTQRTIAKF EEYRDSIKAK ATKLPKKHPR CIADGNELLR  300
FHCTTFTCSL GLNGSSNLCN SIPQCNVCSI IKNGFKVTQE TNKGLRGNGI LTTATSGKAH  360
DKAGVEDGSD ARAMLVCRVI AGRVKKSMEG NLEEYDSVAG AMGMYSNLDE LYVFNPKAIL  420
PCFVVIYSGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-105	C2H2 family protein