PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41496.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 288aa MW: 32353.2 Da PI: 8.7984

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.9	8.7e-26	10	57	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+n + rqvtfskRr g++KKAeELSvLCdaev viifs tgkl+e GAY41496.1 10 KIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFES 57 69*******************************************985 PP
2	K-box	51.4	4.7e-18	87	171	15	99
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + ++ L +ei r++R++ GedL+ L+++eLq+Le+ Le++l+++ ++K + ++++i++l +k +l eenk+L++k++ GAY41496.1 87 QLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 555667888899999999*****************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MAREKIKIRK IDNITARQVT FSKRRRGLFK KAEELSVLCD AEVGVIIFSA TGKLFESSSS 60 SMKDIMARYH MHSSNIGKLN HPSLELQLEN SKYLSLSREI ADKSRQLRQM RGEDLHGLTI 120 EELQHLETML EQGLSRVLQT KGDRIMNEIS TLERKGAKLL EENKNLKQKV ASLCKGKRVV 180 LVDSDIAIQE EGMSSESVNN VCSCSSGPPP EDDSFPTPAE LGADNQIKRI NSTVNKAVTM 240 PYFLDAVVFM ELSERNISKK RLVLDSRRSD YRWLGVTAIC DCTVLTSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	2e-73	MIKC_MADS family protein