PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY41250.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 434aa    MW: 47074.2 Da    PI: 7.8633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY41250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.5e-08113133526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 lCr++ + G C yG++CkF H+
  GAY41250.1 113 LCRNWVQ-GNCMYGEKCKFLHS 133
                 8******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MDFDAHGGNK RVFHRLGGGG GDGGGGGLST ADTRQKVCNY WRAGKCNRFP CPYLHRELPL  60
PPAATANGAA AKRFANNTWG RNNNFNNHSN NYRAGNSKNS NINNRAVIKT DILCRNWVQG  120
NCMYGEKCKF LHSWTVGDGF KLLTQLEGHQ KVVSGITLPS GSDKLYSGSK DETVRVWDCA  180
SGQCAGVINL GGEVGCMISE GPWIFIGVTN FVKAWNTQTN TDLSLSGPVG QVYAMAVGND  240
LLFAGTQDGA ILAWKFNVTT NCFEPAASLK GHSLAVVSLV VGANKLYSGS MDNSIRVWNL  300
ETLQCIQTLT EHTSVVMSLL CWDQFLLSCS LDKTIKVWFA TDSGNLEVTY THNEEHGVLA  360
LCGMPDSEGK PVLLCSCNDN SVRFYDLPSF AERGKIFAKQ EIRAIQLGPG GLFFTGDGTG  420
QVRVWQWCNG PVAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein