PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40884.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-other

Protein Properties

Length: 1068aa MW: 118741 Da PI: 8.7087

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23	1.4e-07	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++e+F+ + +s++e +e++++ g+t +qVk +F +R++ +k GAY40884.1 69 KRPRDLLNPKAVKYMQEVFALKDAISKKESREISAQFGVTVTQVKDFFASQRTRVRK 125 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence
MEALKENSME IEIGSSAESF QKFLDSQSEL FHSQIEKLQN VVVTQCRLTG ANPLAQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQEVFALK DAISKKESRE ISAQFGVTVT QVKDFFASQR 120 TRVRKLVRLS KEKAIKSDAR KDSHNVMVPV SSDSVIPISS DYVIPTDLVP SSSACPTSVI 180 PVNPIPLNSI GPLKVDEAPS CSGRDECQLG LDDLDKHFVE NFFSLMRKEE TFSGQVKLME 240 QILRIENSSI LYWFLTKGGV MILATWLSQA ADEEQTSVLI VILNVLCHLP LQKALPEQMS 300 AILQSVKRLR YYRASDLSNR ANVLLSKWSK MFSRSQALKK HGAKHSTDSQ NDIGEIMADE 360 SWLSSSNASE NSLATLCESS ESFRKSESPQ SVKLLTASSD DSGRKNILDN RERRKTQFVE 420 QPGQKSAGRS LQASRLAPVG QARPMSADDI QKAKLKAMYK RQNKYGKTSF LSNGINEVKA 480 EGLEKSTTQA TNFPPISKVL VRPHIEEFKK SVTPEPKISS RPEAPLDPEQ KKDVEMPPEE 540 KLKIVFKEPS EEKQKIGVKE PPQEKQKMEV KESSQEKWLR VQIPWQTPPE VKLNTHWRVG 600 NGENSKEVEV QKNRIHRETE TICHKIQEIP YNPKEPWDLE MDYDDTLTPE LPIEQPPDAD 660 SVEETQFPSD NVTLNNAAPS LPIPSQIAPP PQIANASASA AEPDLELLAV LLKNPELVFA 720 LTTGQAGNLS SEDTVKLLDM IKSGGAGAGL ASNVNGMRGK VEEKVEVSLP SPTPSSNPGT 780 SGWRQDVVRN PFSRGSPMES NVVLSSLEVA STEKLHTTNV IRSGISAMNV TIPQQPTSAM 840 HPSLHQTIPE RQLHSVVPSL RQSHSISSPI VQTQAMKNLP NASPSYISNV KAAPMHINAP 900 ERQPVSHPSS TLIPTSARSQ PQLQPQQPHM SNPTHVASLY PSRQPMGNSG PASESWQASQ 960 RLASNSRYQV NQNNYNGSFG GPMQRRQVLS GPPRERNGYA GNDGFESWSP DNSPTRPPEY 1020 EPRRNLQEPR MNSGWSNGPD RSRQWNTSEQ REVRDHNKYG YTWRDRRH

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence

MEALKENSME IEIGSSAESF QKFLDSQSEL FHSQIEKLQN VVVTQCRLTG ANPLAQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQEVFALK DAISKKESRE ISAQFGVTVT QVKDFFASQR  120
TRVRKLVRLS KEKAIKSDAR KDSHNVMVPV SSDSVIPISS DYVIPTDLVP SSSACPTSVI  180
PVNPIPLNSI GPLKVDEAPS CSGRDECQLG LDDLDKHFVE NFFSLMRKEE TFSGQVKLME  240
QILRIENSSI LYWFLTKGGV MILATWLSQA ADEEQTSVLI VILNVLCHLP LQKALPEQMS  300
AILQSVKRLR YYRASDLSNR ANVLLSKWSK MFSRSQALKK HGAKHSTDSQ NDIGEIMADE  360
SWLSSSNASE NSLATLCESS ESFRKSESPQ SVKLLTASSD DSGRKNILDN RERRKTQFVE  420
QPGQKSAGRS LQASRLAPVG QARPMSADDI QKAKLKAMYK RQNKYGKTSF LSNGINEVKA  480
EGLEKSTTQA TNFPPISKVL VRPHIEEFKK SVTPEPKISS RPEAPLDPEQ KKDVEMPPEE  540
KLKIVFKEPS EEKQKIGVKE PPQEKQKMEV KESSQEKWLR VQIPWQTPPE VKLNTHWRVG  600
NGENSKEVEV QKNRIHRETE TICHKIQEIP YNPKEPWDLE MDYDDTLTPE LPIEQPPDAD  660
SVEETQFPSD NVTLNNAAPS LPIPSQIAPP PQIANASASA AEPDLELLAV LLKNPELVFA  720
LTTGQAGNLS SEDTVKLLDM IKSGGAGAGL ASNVNGMRGK VEEKVEVSLP SPTPSSNPGT  780
SGWRQDVVRN PFSRGSPMES NVVLSSLEVA STEKLHTTNV IRSGISAMNV TIPQQPTSAM  840
HPSLHQTIPE RQLHSVVPSL RQSHSISSPI VQTQAMKNLP NASPSYISNV KAAPMHINAP  900
ERQPVSHPSS TLIPTSARSQ PQLQPQQPHM SNPTHVASLY PSRQPMGNSG PASESWQASQ  960
RLASNSRYQV NQNNYNGSFG GPMQRRQVLS GPPRERNGYA GNDGFESWSP DNSPTRPPEY  1020
EPRRNLQEPR MNSGWSNGPD RSRQWNTSEQ REVRDHNKYG YTWRDRRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein