PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40863.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CO-like

Protein Properties

Length: 381aa MW: 43225.6 Da PI: 6.025

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22	3.4e-07	19	61	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+ +++ + l+C+ + lC C e H+ H++ GAY40863.1 19 GRLCDYCNDRVAVLYCRADTAKLCLFCDKEVHSTnqlfskHSR 61 689*****************************66777777776 PP
2	zf-B_box	28	4.6e-09	61	109	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvpl 42 + + C+ ++ ++++fCe+ ++ lC +C e+H++ H+++p+ GAY40863.1 61 RSQLCDVCDASPASIFCETEHSVLCTNCDWESHSQsnlrvssvHNRRPI 109 5689*****************************7788999999988876 PP
3	CCT	62	1.9e-21	337	379	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ al+RYkeK+ktR+++K++rYesRK++AesR R+KGrF+k GAY40863.1 337 RDSALSRYKEKKKTRRYDKHVRYESRKVRAESRTRIKGRFAKI 379 899**************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MTGATQATEH EQRQDQRKGR LCDYCNDRVA VLYCRADTAK LCLFCDKEVH STNQLFSKHS 60 RSQLCDVCDA SPASIFCETE HSVLCTNCDW ESHSQSNLRV SSVHNRRPIE SFSGCPSVNE 120 MFAIIGFDDL DSKALFLNDE TRNYSHFDGV DSDGFSDLFA WETPDFVSLD DLIVSSNAGH 180 NFQAIGNRNA AGGQHKEEML HQLRQLAKLD PNFKYENANI DEPIVGFHSL VPEPISQPGN 240 TNTGSELDAE PNIFPAYEAS TLQWFGDSFD HANQLPSTLF KSCKEESFIV PEKHFDTDGF 300 VKNINEGGEG QSQHPTNTEK SSVFHRVSVH ELNSQERDSA LSRYKEKKKT RRYDKHVRYE 360 SRKVRAESRT RIKGRFAKID H

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MTGATQATEH EQRQDQRKGR LCDYCNDRVA VLYCRADTAK LCLFCDKEVH STNQLFSKHS  60
RSQLCDVCDA SPASIFCETE HSVLCTNCDW ESHSQSNLRV SSVHNRRPIE SFSGCPSVNE  120
MFAIIGFDDL DSKALFLNDE TRNYSHFDGV DSDGFSDLFA WETPDFVSLD DLIVSSNAGH  180
NFQAIGNRNA AGGQHKEEML HQLRQLAKLD PNFKYENANI DEPIVGFHSL VPEPISQPGN  240
TNTGSELDAE PNIFPAYEAS TLQWFGDSFD HANQLPSTLF KSCKEESFIV PEKHFDTDGF  300
VKNINEGGEG QSQHPTNTEK SSVFHRVSVH ELNSQERDSA LSRYKEKKKT RRYDKHVRYE  360
SRKVRAESRT RIKGRFAKID H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	3e-96	CO-like family protein