PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40752.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 382aa MW: 42806 Da PI: 7.4599

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	229	253	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 +kC C k F+rk++L H++ H GAY40752.1 229 HKCVACYKQFKRKDHLIEHMKIsyH 253 79******************97666 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MADCNTPTQI CVLKVELQCC EACPSKMNKK LLKIQGVQGI HIDTEEGLVI VTGLLDPAII 60 MQTIGKLGVE AELLAYEKDP KKAKKKLDHF LKGNSKDNKR NLEEIDDHDH DDRGGYEYDA 120 RYAMPNCTSC HHPNYGTRRV LPGFPRPNYV HPINQPVIYN RPPPPPRYVR WTRPPLPYPF 180 SIYEPQGQDV GNAPHHTLSD ENKVDEISES SGVEMDTEAE LPKRSTARHK CVACYKQFKR 240 KDHLIEHMKI SYHSVHQPKC AVCQKLFKSF ESLREHLTGP LSKAHCLGIF SDRGCNLCMN 300 IFDSPSSLIK HKEACSLSAP VPFEKTLSNA ESQKKISGAI DEKRTCRGPK AVAMDCEMVG 360 GGSNGTLDLC ARVCLVDEDE NI

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MADCNTPTQI CVLKVELQCC EACPSKMNKK LLKIQGVQGI HIDTEEGLVI VTGLLDPAII  60
MQTIGKLGVE AELLAYEKDP KKAKKKLDHF LKGNSKDNKR NLEEIDDHDH DDRGGYEYDA  120
RYAMPNCTSC HHPNYGTRRV LPGFPRPNYV HPINQPVIYN RPPPPPRYVR WTRPPLPYPF  180
SIYEPQGQDV GNAPHHTLSD ENKVDEISES SGVEMDTEAE LPKRSTARHK CVACYKQFKR  240
KDHLIEHMKI SYHSVHQPKC AVCQKLFKSF ESLREHLTGP LSKAHCLGIF SDRGCNLCMN  300
IFDSPSSLIK HKEACSLSAP VPFEKTLSNA ESQKKISGAI DEKRTCRGPK AVAMDCEMVG  360
GGSNGTLDLC ARVCLVDEDE NI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	87	PKKAKKKL