PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40594.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 322aa MW: 35284 Da PI: 8.7169

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL++H + H GAY40594.1 45 YICEVCHKGFQRDQNLQVHRKGH 67 89******************988 PP
2	zf-C2H2	13.3	0.00024	121	143	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + GAY40594.1 121 WKCDKCSKCYAVQSDWKAHTKIC 143 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MSNFVHEVGE DENFRSTIIR NVENGDPDAK VAALSSRTLM ATNRYICEVC HKGFQRDQNL 60 QVHRKGHNLP WKLMQRPTTQ VKKGVYVCPK PNCVHHHPSR ALGDLTGVKK HFCRKHGEKK 120 WKCDKCSKCY AVQSDWKAHT KICGTREHRC DCGIIFSSQN LAASGGMAQS QAQELFSSSM 180 PSTDSDSNTN IRMNPSISRD DIENSLRPIS MSSVGVMVSS NLDPILTSRV SKPYLSSVCG 240 SNACAMAIGS SFTSSTALLQ KAAEMGTMMT SALVQVHMGG SEKMTADFLW AEVEQPVGSG 300 HSNYGKKRSL GGTVVDLGYS NE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-79	C2H2 family protein