PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40437.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 654aa MW: 71567.9 Da PI: 7.1358

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.6e-06	253	273	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg GAY40437.1 253 PCPEFRK-GACPKGDGCEYAHG 273 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MEGGLPKLKD GALYNKSSIL LELSASDDIS AFKREIEEKG FDVDEPSFWY GRRIGSKKMG 60 FEERTPIMIA AMFGSVAVLK YVIETGKVNV NRACGSDGFT ALHCAVAGGA NSSFEVVKLL 120 LSASADVNCV DVYGNKPVDL IPVAMKSPLH SRKRAIELLL KGDHTIFEEE ELVNIPVPQL 180 SKDGTEKKEY PIDVSLPDIN NGVYGTDDFR MYAFKIKPCS RAYSHDWTEC PFVHPGENAR 240 RRDPRKYPYT CVPCPEFRKG ACPKGDGCEY AHGVFESWLH PAQYRTRLCK DEIGCARKVC 300 FFAHKPEELR PVYASTGSAM PSPSPVSASA VDMTTLSPLS LGSASMPLPA TSTPPMSPLA 360 AASSPKSGNL WQNKVNLTPP ALQLPGSRLK TTFSARDLDL LLGLENRTSN LQQQLLDEIS 420 SLSSPSSWSK EYSRIGDVNR NLDEVFESLD PSMLSQLQGM SQKQSTPTQL QSPTGLQMRQ 480 NMNQLRASYP AANLSSSPVR KPSSFGFDSS AAVAAAVMNS RSSAFTKRSQ SFIDRGAVTS 540 RAGLSMVSNP PTMRSSNLSD WSSPDGKLDW GVQGDELNKL KKSASFGFRS NNITTPTTKG 600 FTPSSSNVDE PDVSWVNSLV KDVTPEGQGL FGAEKQQYNP WMEQMYIEQE QMVA

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MEGGLPKLKD GALYNKSSIL LELSASDDIS AFKREIEEKG FDVDEPSFWY GRRIGSKKMG  60
FEERTPIMIA AMFGSVAVLK YVIETGKVNV NRACGSDGFT ALHCAVAGGA NSSFEVVKLL  120
LSASADVNCV DVYGNKPVDL IPVAMKSPLH SRKRAIELLL KGDHTIFEEE ELVNIPVPQL  180
SKDGTEKKEY PIDVSLPDIN NGVYGTDDFR MYAFKIKPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKYPYT CVPCPEFRKG ACPKGDGCEY AHGVFESWLH PAQYRTRLCK DEIGCARKVC  300
FFAHKPEELR PVYASTGSAM PSPSPVSASA VDMTTLSPLS LGSASMPLPA TSTPPMSPLA  360
AASSPKSGNL WQNKVNLTPP ALQLPGSRLK TTFSARDLDL LLGLENRTSN LQQQLLDEIS  420
SLSSPSSWSK EYSRIGDVNR NLDEVFESLD PSMLSQLQGM SQKQSTPTQL QSPTGLQMRQ  480
NMNQLRASYP AANLSSSPVR KPSSFGFDSS AAVAAAVMNS RSSAFTKRSQ SFIDRGAVTS  540
RAGLSMVSNP PTMRSSNLSD WSSPDGKLDW GVQGDELNKL KKSASFGFRS NNITTPTTKG  600
FTPSSSNVDE PDVSWVNSLV KDVTPEGQGL FGAEKQQYNP WMEQMYIEQE QMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein