PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY40300.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 518aa    MW: 58313.2 Da    PI: 6.5054
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY40300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.34.2e-1121575131374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 l++lLlecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+a+r+++s+ ++++ l+         +++  a+++f++vsP++kf+h+t 
  GAY40300.1 157 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMASRVLNSWLGICSPLTNH-------KSVHCAFQVFNNVSPFIKFAHFTS 248
                 5789*******************************9999*********************99755443.......34567899**************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 NqaIlea+++ +rvHiiD+di+qGlQWpaL++ La+R+egpp+lR+Tg+g     s e l etg++L +fA++lg++fef++ +ak++ d++ ++L+++
  GAY40300.1 249 NQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGT----SMEVLLETGKQLFNFAKRLGLSFEFHP-IAKKFGDIDASMLQLR 342
                 ***************************************************....***************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +gE+laV++    h+l+d +++  +    +L+l+ +lsP+vv++veqe++h ++sFl+rf+ +l+yys+lfdsl a +p+++ +r+ vE+ ll rei n
  GAY40300.1 343 RGETLAVHWLQ--HSLYDATGPDWK----TLRLLEELSPRVVTLVEQEISH-GGSFLDRFVGSLHYYSTLFDSLGAYFPSDDPNRHRVEHCLLYREINN 434
                 **********9..999999999888....**********************.789******************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++a  g +r  +  ++++Wr+ l +  GF +vp+s + ++qa+l+l++++  +gy++   +g+l+lgWk+ +L+++S+W+
  GAY40300.1 435 ILAIGGPARSGED-KFKHWRSELARcNGFAQVPMSGNSMAQAQLILNMFPpAHGYSLIPGDGTLMLGWKGTSLFTASSWT 513
                 ********77665.5********9956****************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    
MRGGFEVVHG ALDMMQHYEQ WDYPSIGFPN PCPNSFTKPP PPPLAVIDNR SVNLERNELS  60
EWVEHITQQL IDDMPDSSTN NADHGLQPDH HHTTMGPCED NSIIPSVLGD LRPRKMMRRS  120
YDGEESFSWS NEQQLGVNQS NINCESHNKL DEQGLRLITL LLECAVAISV DNLGEAHRML  180
LELTQMASPY GPSCAERVVA YFAKAMASRV LNSWLGICSP LTNHKSVHCA FQVFNNVSPF  240
IKFAHFTSNQ AILEAFHRRD RVHIIDLDIM QGLQWPALFH ILATRNEGPP HLRMTGMGTS  300
MEVLLETGKQ LFNFAKRLGL SFEFHPIAKK FGDIDASMLQ LRRGETLAVH WLQHSLYDAT  360
GPDWKTLRLL EELSPRVVTL VEQEISHGGS FLDRFVGSLH YYSTLFDSLG AYFPSDDPNR  420
HRVEHCLLYR EINNILAIGG PARSGEDKFK HWRSELARCN GFAQVPMSGN SMAQAQLILN  480
MFPPAHGYSL IPGDGTLMLG WKGTSLFTAS SWTSHASR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-148GRAS family protein