PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40164.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 546aa MW: 59509.8 Da PI: 6.8649

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.2	9.2e-16	324	370	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq GAY40164.1 324 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 370 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MNHCVPDFEF DDDHWIPTSS VLNRPRKSAM AEEDVMELLW QNGPVVLHNQ NQRSLKKSQP 60 SFPADQSAPR EIPSSHHHQQ EQQDHLFMQE DEMASWLHYP LNDTNFDSDF CTDLLYPAPC 120 ITSTTTTTAT ATATPPVRAT HVTDSRPQLN TATTVASAPP LRPPIPPPPR RTANFGLFAR 180 HMPREVASGP SNSKSVTIRE STVVDSSDTP APMRSMEGAS GVNNNNRCRN TSGAGAAATS 240 SGGGGGSSGA RDLTMCEMTV TSSPGGSSAS AEPPAQKPAA EDRKRKGRET DDEYHSEDVE 300 LESADAKKQS RGSTSAKRSR AAEVHNLSER RRRDRINEKM RALQELIPRC NKSDKASMLD 360 EAIEYLKSLQ LQVQMMSVGC GVVPMMFPGV QQYMPNMGMG IGMGMGMGMD MGMSRPMMPF 420 PNVLAGSAMP TPAAAAHLGP RFPMPPFHMP PVPGPDPSRV QAANHSDPMF NSFGMQNPNQ 480 ARASNFVDPY QQYLALHRMQ LPLQQNQSMV QPNASKPSTS KGAENRENPE NHPSESLVKA 540 VACQVL

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MNHCVPDFEF DDDHWIPTSS VLNRPRKSAM AEEDVMELLW QNGPVVLHNQ NQRSLKKSQP  60
SFPADQSAPR EIPSSHHHQQ EQQDHLFMQE DEMASWLHYP LNDTNFDSDF CTDLLYPAPC  120
ITSTTTTTAT ATATPPVRAT HVTDSRPQLN TATTVASAPP LRPPIPPPPR RTANFGLFAR  180
HMPREVASGP SNSKSVTIRE STVVDSSDTP APMRSMEGAS GVNNNNRCRN TSGAGAAATS  240
SGGGGGSSGA RDLTMCEMTV TSSPGGSSAS AEPPAQKPAA EDRKRKGRET DDEYHSEDVE  300
LESADAKKQS RGSTSAKRSR AAEVHNLSER RRRDRINEKM RALQELIPRC NKSDKASMLD  360
EAIEYLKSLQ LQVQMMSVGC GVVPMMFPGV QQYMPNMGMG IGMGMGMGMD MGMSRPMMPF  420
PNVLAGSAMP TPAAAAHLGP RFPMPPFHMP PVPGPDPSRV QAANHSDPMF NSFGMQNPNQ  480
ARASNFVDPY QQYLALHRMQ LPLQQNQSMV QPNASKPSTS KGAENRENPE NHPSESLVKA  540
VACQVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	334	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	4e-67	bHLH family protein