PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40031.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 377aa MW: 41842.6 Da PI: 7.9299

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	111	156	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ GAY40031.1 111 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 156 899***************************.*********996 PP
2	Myb_DNA-binding	56.1	8.5e-18	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ GAY40031.1 163 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 206 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MSLQILKGGG DGNVFNGVHQ GMNFMAPSSH LSLSNTFGTK NPETGFQILS PCPMEINKKP 60 WEARRICVEE RDGVFGVHKN KGLSLDLGEE VEDVIKRPVS GKNGHTKLCA RGHWRPAEDA 120 KLKELVAQYG PQNWNLIAEN LEGRSGKSCR LRWFNQLDPR INRRAFSEEE EERLLAAHRL 180 YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KHREQSSIYR RRKPSSGPFQ NNNININNAN 240 ASSDESTISS NNESASTITD LSLTPSSAKV SPGYFTKFSL MGRSSSEEKE ITKGCGDVDK 300 IYDTGYEFYQ AGPIGGVVMN VDQSGQTDSN SEVSANESVG NNNSNNNKVN LSMYGENETS 360 YEKINMPFID FLGVGAA

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MSLQILKGGG DGNVFNGVHQ GMNFMAPSSH LSLSNTFGTK NPETGFQILS PCPMEINKKP  60
WEARRICVEE RDGVFGVHKN KGLSLDLGEE VEDVIKRPVS GKNGHTKLCA RGHWRPAEDA  120
KLKELVAQYG PQNWNLIAEN LEGRSGKSCR LRWFNQLDPR INRRAFSEEE EERLLAAHRL  180
YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KHREQSSIYR RRKPSSGPFQ NNNININNAN  240
ASSDESTISS NNESASTITD LSLTPSSAKV SPGYFTKFSL MGRSSSEEKE ITKGCGDVDK  300
IYDTGYEFYQ AGPIGGVVMN VDQSGQTDSN SEVSANESVG NNNSNNNKVN LSMYGENETS  360
YEKINMPFID FLGVGAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	5e-69	MYB family protein