PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY39996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 27442.8 Da PI: 6.7863 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.8e-39 | 40 | 141 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael +++ GAY39996.1 40 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQ 138 7***********************9989**********************************************************************9 PP DUF260 99 eel 101 ++l GAY39996.1 139 NQL 141 985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MAEQQPDPIS EPRRRGAGKR ATTAPSPEAE PMSAPAPAAP CGACKFLRRK CVSGCIFAPH 60 FGSDQGAARF AAVHKVFGAS NVSKLLLHIP VNRRQDAVVT ISYEAQARLS DPVYGCVSTI 120 LALQQQVASL QAELTMVQNQ LLNSRFVMAN ALQTSQQPQQ PQHVALLHQQ QQQPAYSNSS 180 SASTNFINMS NLASNFDFAA ETVLSCHSME PLHELSRPAH DDEDDEEESQ IPIMFTNDHH 240 QILHNHRRTN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-63 | LBD family protein |