PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39058.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 426aa MW: 46428.8 Da PI: 7.6415

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.8	5.6e-40	104	234	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + GAY39058.1 104 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrsinynsn 202 789*************************************************************99999888766666666664444444444554444 PP TCP 89 ...............................k 89 + GAY39058.1 203 fsmqqqqqrrslfpgigldtttasptflnfqS 234 44444445556666666666666666666641 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MEGAGGSNSD DRHQFQHHHH HHHNQQRHNF PFQLLEKKED DQQPCSSSSA YHPSSLAINP 60 ITTSADQQQQ EEQQLNTSSS NRSNNISSGL QICAASEASN KKPPPKRTST KDRHTKVDGR 120 GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANFTSLNIS 180 LRSSGSSMSV PSQLRSINYN SNFSMQQQQQ RRSLFPGIGL DTTTASPTFL NFQSNNFSAL 240 LQAKQELRDT STNNSLELSA DQTAEESLGR KRRPEQHELS PQHQMGNYLM QSSSAAVPAS 300 HAQIPANFWM VTNSNNSVMS GDPVWTFPSV NNSAAAMYRG TMSSGLHFMN FSTPLALLPS 360 QQLGSSISGS SGMNINEGQL NMNMLAGLNP YRQVSGTGVS DSQASGSHSH HGGSGDDRHD 420 TTSHHS

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MEGAGGSNSD DRHQFQHHHH HHHNQQRHNF PFQLLEKKED DQQPCSSSSA YHPSSLAINP  60
ITTSADQQQQ EEQQLNTSSS NRSNNISSGL QICAASEASN KKPPPKRTST KDRHTKVDGR  120
GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANFTSLNIS  180
LRSSGSSMSV PSQLRSINYN SNFSMQQQQQ RRSLFPGIGL DTTTASPTFL NFQSNNFSAL  240
LQAKQELRDT STNNSLELSA DQTAEESLGR KRRPEQHELS PQHQMGNYLM QSSSAAVPAS  300
HAQIPANFWM VTNSNNSVMS GDPVWTFPSV NNSAAAMYRG TMSSGLHFMN FSTPLALLPS  360
QQLGSSISGS SGMNINEGQL NMNMLAGLNP YRQVSGTGVS DSQASGSHSH HGGSGDDRHD  420
TTSHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	7e-63	TCP family protein